RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA352610", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA352610 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8047132 8047132 PRJNA352610_P_NODE_25267_length_251_cov_0.865169_g25206_i0 PRJNA352610 25267 251 0.865169 2.17157419 Tenericutes bacterium MZ-XQ 1911683 Bacteria Bacteria 189 1.6599999999999996e-43   NTclustered gi|1307786851|gb|CP017950.1| 1911683 g25206 i0 83.412 7.15537848605578 211 28 84 6 5 211 694229 694022 Tenericutes bacterium MZ-XQ chromosome, complete genome blastn 1796 189 1 Bacteria   Bacillati Mycoplasmatota         Tenericutes bacterium MZ-XQ
29537824 29537824 PRJNA352610_P_NODE_24570_length_253_cov_1.444444_g24509_i0 PRJNA352610 24570 253 1.444444 3.65444332 Mycoplasma sp. CAG:956 1262908 Bacteria Bacteria 42.7 0.0374   NR CCY89304.1 1262908 g24509 i0 49 0.604743083003953 51 25 60.5 1 10 162 90 139 CCY89304.1 methylase of polypeptide chain release factors [Mycoplasma sp. CAG:956] diamond 153 42.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp. CAG:956

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;