RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where bioproject = "PRJNA352610", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 15 ✖

tax_kingdom 1

  • Bacillati · 15 ✖

bioproject 1

  • PRJNA352610 · 15 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8046971 8046971 PRJNA352610_P_NODE_16887_length_301_cov_1.596491_g16826_i0 PRJNA352610 16887 301 1.596491 4.80543791 Chloroflexus aggregans 152260 Bacteria Bacteria 52.8 0.028   NTclustered gi|219541215|gb|CP001337.1| 326427 g16826 i0 100 0.0930232558139535 28 0 9 0 172 199 3476661 3476634 Chloroflexus aggregans DSM 9485, complete genome blastn 28 52.8 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Chloroflexaceae Chloroflexus Chloroflexus aggregans
22070458 22070458 PRJNA352610_P_NODE_30678_length_243_cov_0.905882_g30617_i0 PRJNA352610 30678 243 0.905882 2.20129326 Caldilinea 233191 Bacteria Bacteria 148 2.7899999999999998e-42   NR MCB0024496.1 2293560 g30617 i0 91.3 5.92592592592593 80 7 98.8 0 241 2 84 163 MCB0024496.1 tripartite tricarboxylate transporter substrate binding protein [Caldilinea sp.] diamond 1440 149 0.993288590604027 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae Caldilinea Caldilinea sp.
27060363 27060363 PRJNA352610_P_NODE_9662_length_374_cov_0.906977_g9601_i0 PRJNA352610 9662 374 0.906977 3.39209398 Bacteria 2 Bacteria Bacteria 62 2.77e-8   NR MCS5643244.1 2026734 g9601 i0 31.1 2.0855614973262 132 70 89 2 374 42 130 261 MCS5643244.1 3'-5' exonuclease [Dehalococcoidia bacterium] diamond 780 62 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
27359423 27359423 PRJNA352610_P_NODE_13503_length_329_cov_0.957031_g13442_i0 PRJNA352610 13503 329 0.957031 3.14863199 Levilinea saccharolytica 229921 Bacteria Bacteria 74.7 5.48e-13   NR WP_062417235.1 229921 g13442 i0 46.1 1.79635258358663 102 49 93 3 328 23 253 348 WP_062417235.1 fasciclin domain-containing protein [Levilinea saccharolytica] diamond 591 74.7 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae Levilinea Levilinea saccharolytica
27454205 27454205 PRJNA352610_P_NODE_16043_length_308_cov_1.148936_g15982_i0 PRJNA352610 16043 308 1.148936 3.53872288 Chloroflexota bacterium 2026724 Bacteria Bacteria 48.1 0.00103   NR NDJ63184.1 2026724 g15982 i0 38 0.691558441558442 71 38 66.2 3 272 69 580 647 NDJ63184.1 hypothetical protein [Chloroflexota bacterium] diamond 213 48.1 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
27895925 27895925 PRJNA352610_P_NODE_1605_length_732_cov_1.514416_g1551_i0 PRJNA352610 1605 732 1.514416 11.08552512 Chloroflexota bacterium 2026724 Bacteria Bacteria 104 1.32e-22   NR MCY4018995.1 2026724 g1551 i0 45.3 2.36885245901639 148 67 59.8 4 731 294 160 295 MCY4018995.1 homocysteine S-methyltransferase family protein [Chloroflexota bacterium] diamond 1734 104 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
28717067 28717067 PRJNA352610_P_NODE_447_length_1140_cov_1.942830_g429_i0 PRJNA352610 447 1140 1.94283 22.148262 Candidatus Chlorohelix sp. 3139201 Bacteria Bacteria 114 1.9599999999999994e-23   NR WP_342398676.1 3139201 g429 i0 29.5 1.00789473684211 383 208 84.7 12 137 1102 485 866 WP_342398676.1 NHL repeat-containing protein [Candidatus Chlorohelix sp.] diamond 1149 114 1 Bacteria   Bacillati Chloroflexota Chloroflexia Candidatus Chloroheliales Candidatus Chloroheliaceae Candidatus Chlorohelix Candidatus Chlorohelix sp.
29001525 29001525 PRJNA352610_P_NODE_31348_length_242_cov_0.911243_g31287_i0 PRJNA352610 31348 242 0.911243 2.20520806 Caldilineaceae bacterium 2614250 Bacteria Bacteria 65.1 4.42e-10   NR MFN8467997.1 2614250 g31287 i0 55.7 1.69834710743802 61 25 75.6 1 3 185 20 78 MFN8467997.1 DUF917 domain-containing protein [Caldilineaceae bacterium] diamond 411 65.1 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae   Caldilineaceae bacterium
29348560 29348560 PRJNA352610_P_NODE_3549_length_546_cov_1.507400_g3488_i0 PRJNA352610 3549 546 1.5074 8.230404 Chloroflexota bacterium 2026724 Bacteria Bacteria 205 8.2e-62   NR MFN8636008.1 2026724 g3488 i0 55.8 5.74725274725275 172 63 94.5 2 536 21 7 165 MFN8636008.1 NAD(P)-dependent alcohol dehydrogenase [Chloroflexota bacterium] diamond 3138 205 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
29617862 29617862 PRJNA352610_P_NODE_29790_length_244_cov_0.900585_g29729_i0 PRJNA352610 29790 244 0.900585 2.1974274 Chloroflexota 200795 Bacteria Bacteria 120 1.05e-29   NR MCB0018796.1 2073117 g29729 i0 65.4 3.98360655737705 81 26 98.4 2 240 1 106 185 MCB0018796.1 CocE/NonD family hydrolase [Anaerolineales bacterium] diamond 972 121 0.991735537190083 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
31844690 31844690 PRJNA352610_P_NODE_10937_length_356_cov_1.689046_g10876_i0 PRJNA352610 10937 356 1.689046 6.01300376 Dehalogenimonas sp. THU2 3151121 Bacteria Bacteria 45.4 0.0113   NR WP_346999026.1 3151121 g10876 i0 42.9 0.471910112359551 56 32 47.2 0 173 6 86 141 WP_346999026.1 hypothetical protein [Dehalogenimonas sp. THU2] diamond 168 45.4 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales Dehalococcoidaceae Dehalogenimonas Dehalogenimonas sp. THU2
32224624 32224624 PRJNA352610_P_NODE_29698_length_244_cov_0.900585_g29637_i0 PRJNA352610 29698 244 0.900585 2.1974274 Chloroflexota bacterium 2026724 Bacteria Bacteria 50.4 3.6e-5   NR TMC24550.1 2026724 g29637 i0 40.3 0.94672131147541 77 33 81.1 4 200 3 94 168 TMC24550.1 MAG: hypothetical protein E6J33_00925, partial [Chloroflexota bacterium] diamond 231 50.4 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
32256537 32256537 PRJNA352610_P_NODE_7058_length_422_cov_0.939828_g6997_i0 PRJNA352610 7058 422 0.939828 3.96607416 uncultured Thermanaerothrix sp. 1195149 Bacteria Bacteria 126 1.1e-32   NR WP_299029763.1 1195149 g6997 i0 52.3 0.938388625592417 132 60 93.8 1 406 11 6 134 WP_299029763.1 ADP-ribosylglycohydrolase family protein [uncultured Thermanaerothrix sp.] diamond 396 126 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae Thermanaerothrix uncultured Thermanaerothrix sp.
32288135 32288135 PRJNA352610_P_NODE_30819_length_242_cov_1.449704_g30758_i0 PRJNA352610 30819 242 1.449704 3.50828368 Chloroflexi bacterium TSY 2834438 Bacteria Bacteria 42.4 0.0472   NR MBV7332066.1 2834438 g30758 i0 30.6 0.892561983471074 72 50 89.3 0 222 7 41 112 MBV7332066.1 ABC transporter permease [Chloroflexi bacterium TSY] diamond 216 42.4 1 Bacteria   Bacillati Chloroflexota         Chloroflexi bacterium TSY
32541142 32541142 PRJNA352610_P_NODE_1219_length_809_cov_1.464674_g1169_i0 PRJNA352610 1219 809 1.464674 11.84921266 Anaerolineales bacterium 2073117 Bacteria Bacteria 356 2.38e-116   NR HLE51792.1 2073117 g1169 i0 59.1 3.10383189122373 276 103 99.4 4 2 805 274 547 HLE51792.1 hypothetical protein [Anaerolineales bacterium] diamond 2511 356 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;