RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA352610" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA352610 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28811385 28811385 PRJNA352610_P_NODE_8868_length_386_cov_0.869010_g8807_i0 PRJNA352610 8868 386 0.86901 3.3543786 SAR324 cluster bacterium 2024889 Bacteria Bacteria 52.4 7.49e-5   NR MDG2063940.1 2024889 g8807 i0 26.8 0.987046632124352 127 85 95.6 3 383 15 135 257 MDG2063940.1 LamG domain-containing protein [SAR324 cluster bacterium] diamond 381 52.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
31830168 31830168 PRJNA352610_P_NODE_15537_length_312_cov_1.602510_g15476_i0 PRJNA352610 15537 312 1.60251 4.9998312 Bacteria 2 Bacteria Bacteria 89 5.44e-18   NR CAB5147094.1 426688 g15476 i0 38.5 2.99038461538462 104 64 100 0 312 1 8414 8517 CAB5147094.1 Alkaline phosphatase (EC [Olavius algarvensis associated proteobacterium Delta 3] diamond 933 89 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Olavius algarvensis associated proteobacterium Delta 3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;