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contig_metadata

21 rows where bioproject = "PRJNA352610", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 21 ✖

tax_clade 1

  • Sar · 21 ✖

bioproject 1

  • PRJNA352610 · 21 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
393856 393856 PRJNA352610_P_NODE_23101_length_262_cov_1.148148_g23040_i0 PRJNA352610 23101 262 1.148148 3.00814776 Peronospora belbahrii 622444 SAR_Eukaryotes SAR_Eukaryotes 159 1.37e-34   NTclustered gi|1590853183|gb|MH620960.1| 622444 g23040 i0 82.011 33.1641221374046 189 32 72 2 69 256 103 290 Peronospora belbahrii isolate HI01 beta-tubulin mRNA, complete cds blastn 8689 159 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora belbahrii
393932 393932 PRJNA352610_P_NODE_26761_length_249_cov_0.875000_g26700_i0 PRJNA352610 26761 249 0.875 2.17875 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 167 7.709999999999999e-37   NTclustered gi|2795041302|ref|XM_067930902.1| 4785 g26700 i0 80.455 21.4738955823293 220 41 88 2 23 241 1359 1141 Phytophthora cinnamomi CCR4-NOT transcription complex subunit 11 (IUM83_06675), partial mRNA blastn 5347 167 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
19519807 19519807 PRJNA352610_P_NODE_31936_length_241_cov_0.916667_g31875_i0 PRJNA352610 31936 241 0.916667 2.20916747 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.022   NTclustered gi|2794919753|ref|XM_067895242.1| 164328 g31875 i0 100 0.116182572614108 28 0 12 0 30 57 39 66 Phytophthora ramorum Choline transporter-like protein 1 (KRP23_9661), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
26617143 26617143 PRJNA352610_P_NODE_2281_length_641_cov_1.382042_g2222_i0 PRJNA352610 2281 641 1.382042 8.85888922 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 276 9.35e-91   NR KAF1326337.1 82926 g2222 i0 67 3.9594383775351 212 68 99.2 1 3 638 13 222 KAF1326337.1 Ribulose-phosphate 3-epimerase, partial [Globisporangium splendens] diamond 2538 277 0.996389891696751 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
26821770 26821770 PRJNA352610_P_NODE_11541_length_349_cov_1.137681_g11480_i0 PRJNA352610 11541 349 1.137681 3.97050669 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 62.8 1.22e-8   NR KAF0690009.1 120398 g11480 i0 37.6 0.730659025787966 85 53 73.1 0 95 349 690 774 KAF0690009.1 hypothetical protein As57867_018509 [Aphanomyces stellatus] diamond 255 62.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
27769995 27769995 PRJNA352610_P_NODE_30984_length_242_cov_0.911243_g30923_i0 PRJNA352610 30984 242 0.911243 2.20520806 Saprolegnia parasitica CBS 223.65 695850 SAR_Eukaryotes SAR_Eukaryotes 98.2 6.3299999999999986e-24   NR XP_012199480.1 695850 g30923 i0 69.3 1.8595041322314 75 22 93 1 14 238 43 116 XP_012199480.1 hypothetical protein SPRG_04952 [Saprolegnia parasitica CBS 223.65] diamond 450 98.2 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
27895942 27895942 PRJNA352610_P_NODE_24405_length_254_cov_1.276243_g24344_i0 PRJNA352610 24405 254 1.276243 3.24165722 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 51.2 3.76e-5   NR XP_008872675.1 157072 g24344 i0 39.3 1.98425196850394 84 47 95.7 2 245 3 139 221 XP_008872675.1 tRNA pseudouridine(38-40) synthase, variant 2 [Aphanomyces invadans] diamond 504 51.2 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
28022507 28022507 PRJNA352610_P_NODE_4925_length_483_cov_1.126829_g4864_i0 PRJNA352610 4925 483 1.126829 5.44258407 Saprolegnia diclina VS2 112098 SAR_Eukaryotes SAR_Eukaryotes 49.3 0.00197   NR XP_008617958.1 1156394 g4864 i0 47.2 0.329192546583851 53 27 32.3 1 166 11 370 422 XP_008617958.1 hypothetical protein SDRG_13639 [Saprolegnia diclina VS20] diamond 159 49.3 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
28401210 28401210 PRJNA352610_P_NODE_14686_length_319_cov_1.065041_g14625_i0 PRJNA352610 14686 319 1.065041 3.39748079 Phytophthora palmivora 4796 SAR_Eukaryotes SAR_Eukaryotes 44.3 0.0257   NR POM58589.1 4796 g14625 i0 32 1.49529780564263 75 50 69.6 1 314 93 45 119 POM58589.1 Ankyrin repeat protein [Phytophthora palmivora] diamond 477 44.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora palmivora
28401229 28401229 PRJNA352610_P_NODE_26066_length_250_cov_0.870056_g26005_i0 PRJNA352610 26066 250 0.870056 2.17514 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 48.1 5.12e-4   NR RHY29310.1 157072 g26005 i0 51.4 2.1 35 17 42 0 83 187 552 586 RHY29310.1 hypothetical protein DYB32_005240 [Aphanomyces invadans] diamond 525 48.1 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
28748514 28748514 PRJNA352610_P_NODE_24067_length_256_cov_1.262295_g24006_i0 PRJNA352610 24067 256 1.262295 3.2314752 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 45.8 0.00352   NR GLD96390.1 114742 g24006 i0 42.1 2.23828125 38 22 44.5 0 255 142 206 243 GLD96390.1 hypothetical protein PINS_up005073 [Pythium insidiosum] diamond 573 45.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
29049993 29049993 PRJNA352610_P_NODE_15508_length_313_cov_0.854167_g15447_i0 PRJNA352610 15508 313 0.854167 2.67354271 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 101 1.84e-22   NR KAK1947031.1 4793 g15447 i0 51.7 12.1533546325879 89 43 85.3 0 310 44 962 1050 KAK1947031.1 Xanthine dehydrogenase [Phytophthora citrophthora] diamond 3804 102 0.990196078431373 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora citrophthora
29663846 29663846 PRJNA352610_P_NODE_7150_length_419_cov_1.335260_g7089_i0 PRJNA352610 7150 419 1.33526 5.5947394 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 122 2.4699999999999996e-29   NR KUF80320.1 4792 g7089 i0 51.6 1.90453460620525 128 60 91.6 2 3 386 241 366 KUF80320.1 hypothetical protein AM587_10016941 [Phytophthora nicotianae] diamond 798 122 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
29997319 29997319 PRJNA352610_P_NODE_1471_length_757_cov_1.130117_g1419_i0 PRJNA352610 1471 757 1.130117 8.55498569 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 115 1.61e-26   NR TMW57009.1 41045 g1419 i0 31.3 1.82694848084544 230 138 87.6 5 753 91 68 286 TMW57009.1 hypothetical protein Poli38472_002934 [Pythium oligandrum] diamond 1383 116 0.991379310344828 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
30408242 30408242 PRJNA352610_P_NODE_6853_length_426_cov_1.305949_g6792_i0 PRJNA352610 6853 426 1.305949 5.56334274 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 141 3.9e-38   NR KAF0693398.1 120398 g6792 i0 49 11.4507042253521 145 65 99.3 3 3 425 145 284 KAF0693398.1 hypothetical protein As57867_015595 [Aphanomyces stellatus] diamond 4878 142 0.992957746478873 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
30580065 30580065 PRJNA352610_P_NODE_25893_length_250_cov_0.870056_g25832_i0 PRJNA352610 25893 250 0.870056 2.17514 Globisporangium splendens 82926 SAR_Eukaryotes SAR_Eukaryotes 45.8 0.00343   NR KAF1329359.1 82926 g25832 i0 44.6 0.78 65 32 78 2 198 4 129 189 KAF1329359.1 reverse transcriptase, partial [Globisporangium splendens] diamond 195 45.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
30833068 30833068 PRJNA352610_P_NODE_24374_length_254_cov_1.624309_g24313_i0 PRJNA352610 24374 254 1.624309 4.12574486 [Pythium] brassicae (nom. inval.) 1485010 SAR_Eukaryotes SAR_Eukaryotes 51.6 3.14e-5   NR TYZ68931.1 1485010 g24313 i0 46 0.590551181102362 50 27 59.1 0 248 99 343 392 TYZ68931.1 hypothetical protein PybrP1_012193, partial [[Pythium] brassicae (nom. inval.)] diamond 150 51.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)
31402190 31402190 PRJNA352610_P_NODE_23856_length_257_cov_1.603261_g23795_i0 PRJNA352610 23856 257 1.603261 4.12038077 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 48.5 4.07e-4   NR TMW64476.1 41045 g23795 i0 37.9 2.49805447470817 58 34 65.4 1 75 242 121 178 TMW64476.1 hypothetical protein Poli38472_011356 [Pythium oligandrum] diamond 642 48.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
31654856 31654856 PRJNA352610_P_NODE_13897_length_325_cov_1.535714_g13836_i0 PRJNA352610 13897 325 1.535714 4.9910705 Bremia lactucae 4779 SAR_Eukaryotes SAR_Eukaryotes 81.6 1.4e-15   NR XP_067816803.1 4779 g13836 i0 70.2 3.13846153846154 57 16 52.6 1 155 325 27 82 XP_067816803.1 hypothetical protein CCR75_001676 [Bremia lactucae] diamond 1020 81.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
31686543 31686543 PRJNA352610_P_NODE_18517_length_290_cov_1.064516_g18456_i0 PRJNA352610 18517 290 1.064516 3.0870964 Globisporangium splendens 82926 SAR_Eukaryotes SAR_Eukaryotes 77.8 3.19e-14   NR KAF1332490.1 82926 g18456 i0 42 1.03448275862069 100 53 98.3 2 285 1 208 307 KAF1332490.1 Kinesin-like protein, partial [Globisporangium splendens] diamond 300 77.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
32824435 32824435 PRJNA352610_P_NODE_19060_length_287_cov_0.864486_g18999_i0 PRJNA352610 19060 287 0.864486 2.48107482 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 72.4 5.09e-13   NR TMW60219.1 41045 g18999 i0 50.7 0.721254355400697 69 34 72.1 0 284 78 59 127 TMW60219.1 hypothetical protein Poli38472_000261 [Pythium oligandrum] diamond 207 72.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;