RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA352610", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 5 ✖

tax_clade 1

  • Discoba · 5 ✖

bioproject 1

  • PRJNA352610 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26885102 26885102 PRJNA352610_P_NODE_19161_length_286_cov_1.084507_g19100_i0 PRJNA352610 19161 286 1.084507 3.10169002 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 45.4 0.00682   NR CAG4719256.1 5763 g19100 i0 42.2 1.34265734265734 64 33 64 2 242 60 181 243 CAG4719256.1 unnamed protein product [Naegleria fowleri] diamond 384 45.4 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
27391054 27391054 PRJNA352610_P_NODE_26823_length_249_cov_0.875000_g26762_i0 PRJNA352610 26823 249 0.875 2.17875 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 48.1 4.9e-4   NR XP_002674284.1 5762 g26762 i0 40 0.72289156626506 60 34 72.3 1 38 217 123 180 XP_002674284.1 uncharacterized protein NAEGRDRAFT_70572 [Naegleria gruberi] diamond 180 48.1 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
27675287 27675287 PRJNA352610_P_NODE_6924_length_425_cov_0.875000_g6863_i0 PRJNA352610 6924 425 0.875 3.71875 Acrasis kona 1008807 Heterolobosea other_Eukaryota 139 1.61e-36   NR KAL0478461.1 1008807 g6863 i0 55.9 0.783529411764706 111 49 78.4 0 52 384 12 122 KAL0478461.1 hypothetical protein AKO1_000409 [Acrasis kona] diamond 333 139 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
28432847 28432847 PRJNA352610_P_NODE_12686_length_337_cov_1.053030_g12625_i0 PRJNA352610 12686 337 1.05303 3.5487111 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 47.8 0.00179   NR XP_044547435.1 51637 g12625 i0 39.4 0.587537091988131 66 37 57.9 2 5 199 330 393 XP_044547435.1 uncharacterized protein C9374_006140 [Naegleria lovaniensis] diamond 198 47.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
31419125 31419125 PRJNA352610_P_NODE_14436_length_321_cov_1.012097_g14375_i0 PRJNA352610 14436 321 1.012097 3.24883137 root 1 Root_unresolved Root_unresolved 89 2.22e-18   NR KAL0490907.1 1008807 g14375 i0 48.8 8.41121495327103 84 41 76.6 1 37 282 1 84 KAL0490907.1 RNA-editing ligase 2, mitochondrial [Acrasis kona] diamond 2700 89.4 0.995525727069351 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;