RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA352610", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA352610 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29064447 29064447 PRJNA352610_P_NODE_8608_length_390_cov_1.208202_g8547_i0 PRJNA352610 8608 390 1.208202 4.7119878 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 66.2 9.86e-10   NR XP_004367869.1 1257118 g8547 i0 52.1 0.546153846153846 71 32 53.1 1 2 208 288 358 XP_004367869.1 transcriptional regulator, Sir2 family protein [Acanthamoeba castellanii str. Neff] diamond 213 66.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32824457 32824457 PRJNA352610_P_NODE_940_length_878_cov_1.554037_g898_i0 PRJNA352610 940 878 1.554037 13.64444486 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 371 8.950000000000001e-123   NR XP_004358245.1 1257118 g898 i0 63.4 1.98519362186788 292 96 98.4 3 10 873 1 285 XP_004358245.1 transcriptional regulator, Sir2 family protein [Acanthamoeba castellanii str. Neff] diamond 1743 371 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;