RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA348537", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA348537 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5497120 5497120 PRJNA348537_S_NODE_2865_length_182_cov_2.768707_g2819_i0 PRJNA348537 2865 182 2.768707 5.03904674 Labilithrix luteola 1391654 Bacteria Bacteria 257 3.06e-64   NTclustered gi|913610804|gb|CP012333.1| 1391654 g2819 i0 92.35 184.016483516484 183 11 99 2 1 181 3943230 3943049 Labilithrix luteola strain DSM 27648, complete genome blastn 33491 257 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
11872096 11872096 PRJNA348537_S_NODE_1690_length_226_cov_2.146597_g1644_i0 PRJNA348537 1690 226 2.146597 4.85130922 Archangium violaceum 83451 Bacteria Bacteria 117 7.03e-22   NTclustered gi|1985695619|gb|CP069396.1| 83451 g1644 i0 79.755 119.747787610619 163 32 72 1 65 226 586020 586182 Archangium violaceum strain SDU8 chromosome, complete genome blastn 27063 117 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;