RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA348537", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

  • Kitrinoviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA348537 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2944141 2944141 PRJNA348537_S_NODE_3483_length_168_cov_1.992481_g3437_i0 PRJNA348537 3483 168 1.992481 3.34736808 Tobamovirus tabaci 3432891 Viruses Viruses 289 9.879999999999999e-74   NTclustered gi|2647550517|gb|OR843963.1| 12242 g3437 i0 97.619 99.9226190476191 168 4 100 0 1 168 1428 1261 Tobacco mosaic virus strain MR644-18E/1480 nonstructural polyprotein p126 gene, partial cds blastn 16787 289 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
5497123 5497123 PRJNA348537_S_NODE_2945_length_180_cov_2.096552_g2899_i0 PRJNA348537 2945 180 2.096552 3.7737936 Tobamovirus tabaci 3432891 Viruses Viruses 298 1.78e-76   NTclustered gi|1590853296|gb|MH595920.1| 12242 g2899 i0 96.648 99.3777777777778 179 6 99 0 2 180 4158 4336 Tobacco mosaic virus isolate Harbin-2, complete genome blastn 17888 298 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
22069967 22069967 PRJNA348537_S_NODE_4278_length_155_cov_2.558333_g4232_i0 PRJNA348537 4278 155 2.558333 3.96541615 Tobamovirus tabaci 3432891 Viruses Viruses 268 1.16e-67   NTclustered gi|193297004|gb|EU796225.1| 12242 g4232 i0 98.052 98.7870967741935 154 3 99 0 2 155 159 312 Tobacco mosaic virus movement protein gene, complete cds; and coat protein gene, partial cds blastn 15312 268 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;