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contig_metadata

21 rows where bioproject = "PRJNA348537" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 21 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA348537 · 21 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
393542 393542 PRJNA348537_S_NODE_2601_length_189_cov_2.551948_g2555_i0 PRJNA348537 2601 189 2.551948 4.82318172 Gallus gallus 9031 Chordata Chordata 344 2.39e-90   NTclustered gi|46427336|emb|CR338738.2| 9031 g2555 i0 99.471 98.5291005291005 189 1 100 0 1 189 227 39 Gallus gallus finished cDNA, clone ChEST52d12 blastn 18622 344 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
1668138 1668138 PRJNA348537_S_NODE_1402_length_246_cov_7.421801_g1356_i0 PRJNA348537 1402 246 7.421801 18.25763046 Erpetoichthys calabaricus 27687 Chordata Chordata 185 2.1e-42   NTclustered gi|2327581580|ref|XM_051922993.1| 27687 g1356 i0 84.343 7.15040650406504 198 22 79 5 1 195 1271 1080 PREDICTED: Erpetoichthys calabaricus E3 SUMO-protein ligase ZBED1-like (LOC127526706), mRNA blastn 1759 185 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
2345769 2345769 PRJNA348537_S_NODE_1982_length_210_cov_28.834286_g1936_i0 PRJNA348537 1982 210 28.834286 60.5520006 Gallus 9030 Chordata Chordata 388 1.24e-103   NTclustered gi|2028522877|gb|MT800350.1| 9031 g1936 i0 100 100 210 0 100 0 1 210 2352 2561 Gallus gallus isolate 33917 mitochondrion, complete genome blastn 21000 388 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
2944143 2944143 PRJNA348537_S_NODE_4463_length_153_cov_1.322034_g4417_i0 PRJNA348537 4463 153 1.322034 2.02271202 Sus scrofa 9823 Chordata Chordata 261 1.91e-65   NTclustered gi|125656126|emb|CU179670.7| 9823 g4417 i0 97.386 130.222222222222 153 4 100 0 1 153 118261 118109 Pig DNA sequence from clone CH242-299E13 on chromosome 4, complete sequence blastn 19924 261 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
6173322 6173322 PRJNA348537_S_NODE_4145_length_157_cov_1.581967_g4099_i0 PRJNA348537 4145 157 1.581967 2.48368819 root 1 Root_unresolved Root_unresolved 276 7.06e-70   NTclustered gi|2645168801|gb|OR992004.1| 10090 g4099 i0 100 94.9044585987261 149 0 95 0 9 157 552 700 Mus musculus transgenic puromycin-resistant protein (Puro) gene, complete cds; red fluorescence protein (RFP) gene, complete sequence; and GFP-I-SceI (GFP-I-SceI) gene, complete cds blastn 14900 276 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
6173328 6173328 PRJNA348537_S_NODE_865_length_305_cov_8.137037_g819_i0 PRJNA348537 865 305 8.137037 24.81796285 Gallus 9030 Chordata Chordata 553 6.39e-153   NTclustered gi|2028522877|gb|MT800350.1| 9031 g819 i0 99.344 100 305 2 100 0 1 305 2957 3261 Gallus gallus isolate 33917 mitochondrion, complete genome blastn 30500 553 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
6771112 6771112 PRJNA348537_S_NODE_1186_length_267_cov_3.771552_g1140_i0 PRJNA348537 1186 267 3.771552 10.07004384 Gallus gallus 9031 Chordata Chordata 479 9.46e-131   NTclustered gi|2369860|emb|Y14698.1| 9031 g1140 i0 99.618 97.8389513108614 262 1 98 0 1 262 575 314 Gallus gallus mRNA for ferritin H chain blastn 26123 479 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
6771118 6771118 PRJNA348537_S_NODE_2266_length_200_cov_3.569697_g2220_i0 PRJNA348537 2266 200 3.569697 7.139394 Gallus gallus 9031 Chordata Chordata 363 7.069999999999999e-96   NTclustered gi|53136515|emb|AJ720928.1| 9031 g2220 i0 100 97.94 196 0 98 0 1 196 87 282 Gallus gallus mRNA for hypothetical protein, clone 30d2 blastn 19588 363 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
7448304 7448304 PRJNA348537_S_NODE_3786_length_162_cov_53.574803_g3740_i0 PRJNA348537 3786 162 53.574803 86.79118086 Phasianidae 9005 Chordata Chordata 291 2.62e-74   NTclustered gi|2024360878|ref|XR_005840240.1| 9031 g3740 i0 99.375 104.259259259259 160 1 99 0 1 160 1409 1250 PREDICTED: Gallus gallus 28S ribosomal RNA (LOC121106977), rRNA blastn 16890 291 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
8046754 8046754 PRJNA348537_S_NODE_2267_length_200_cov_3.424242_g2221_i0 PRJNA348537 2267 200 3.424242 6.848484 Gallus gallus 9031 Chordata Chordata 370 4.22e-98   NTclustered gi|2099366668|ref|NM_001082417.3| 9031 g2221 i0 100 99.97 200 0 100 0 1 200 471 272 Gallus gallus ribosomal protein S3A (RPS3A), mRNA blastn 19994 370 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
13147115 13147115 PRJNA348537_S_NODE_1691_length_226_cov_1.989529_g1645_i0 PRJNA348537 1691 226 1.989529 4.49633554 Bos javanicus 9906 Chordata Chordata 407 3.73e-109   NTclustered gi|2633802649|ref|XM_061398041.1| 9906 g1645 i0 99.115 1111.20796460177 226 2 100 0 1 226 3822 3597 PREDICTED: Bos javanicus chromosome 23 C6orf89 homolog (C23H6orf89), transcript variant X1, mRNA blastn 251133 407 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
13147120 13147120 PRJNA348537_S_NODE_2691_length_187_cov_1.875000_g2645_i0 PRJNA348537 2691 187 1.875 3.50625 Gallus gallus 9031 Chordata Chordata 346 6.56e-91   NTclustered gi|41634641|emb|BX934113.1| 9031 g2645 i0 100 7.50267379679144 187 0 100 0 1 187 433 247 Gallus gallus finished cDNA, clone ChEST115c10 blastn 1403 346 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
15098222 15098222 PRJNA348537_S_NODE_1632_length_228_cov_206.336788_g1586_i0 PRJNA348537 1632 228 206.336788 470.44787664 root 1 Root_unresolved Root_unresolved 62.1 3.38e-5   NTclustered gi|1561711934|ref|XM_014584767.2| 246437 g1586 i0 97.222 17.9912280701754 36 1 16 0 62 97 1864 1829 PREDICTED: Tupaia chinensis heat shock cognate 71 kDa protein-like (LOC102499912), mRNA blastn 4102 62.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Scandentia Tupaiidae Tupaia Tupaia chinensis
16372981 16372981 PRJNA348537_S_NODE_2273_length_200_cov_2.066667_g2227_i0 PRJNA348537 2273 200 2.066667 4.133334 root 1 Root_unresolved Root_unresolved 370 4.22e-98   NTclustered gi|2201772274|ref|XM_040688225.2| 9031 g2227 i0 100 94.42 200 0 100 0 1 200 1015 1214 PREDICTED: Gallus gallus uncharacterized LOC107055521 (LOC107055521), mRNA blastn 18884 370 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
18245076 18245076 PRJNA348537_S_NODE_2675_length_187_cov_7.907895_g2629_i0 PRJNA348537 2675 187 7.907895 14.78776365 Gallus gallus 9031 Chordata Chordata 320 3.97e-83   NTclustered gi|2024360878|ref|XR_005840240.1| 9031 g2629 i0 100 99.513368983957207 173 0 93 0 1 173 4343 4171 PREDICTED: Gallus gallus 28S ribosomal RNA (LOC121106977), rRNA blastn 18609 320 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
18245084 18245084 PRJNA348537_S_NODE_4455_length_153_cov_1.677966_g4409_i0 PRJNA348537 4455 153 1.677966 2.56728798 Gallus gallus 9031 Chordata Chordata 252 1.15e-62   NTclustered gi|41632445|emb|BX931917.1| 9031 g4409 i0 99.281 44.3790849673203 139 1 91 0 15 153 10 148 Gallus gallus finished cDNA, clone ChEST790c21 blastn 6790 252 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
20794885 20794885 PRJNA348537_S_NODE_4637_length_151_cov_1.120690_g4591_i0 PRJNA348537 4637 151 1.12069 1.6922419 Ovis aries 9940 Chordata Chordata 241 2.4500000000000008e-59   NTclustered gi|2607017730|ref|XM_060397519.1| 9940 g4591 i0 95.364 464.814569536424 151 7 100 0 1 151 7978 7828 PREDICTED: Ovis aries 5'-3' exoribonuclease 2 (XRN2), transcript variant X4, mRNA blastn 70187 241 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis aries
22747352 22747352 PRJNA348537_S_NODE_2398_length_196_cov_0.906832_g2352_i0 PRJNA348537 2398 196 0.906832 1.77739072 Artiodactyla 91561 Chordata Chordata 307 3.2800000000000005e-79   NTclustered gi|2633809872|ref|XR_009733359.1| 9906 g2352 i0 94.898 500.163265306122 196 10 100 0 1 196 3913 3718 PREDICTED: Bos javanicus uncharacterized LOC133237791 (LOC133237791), ncRNA blastn 98032 309 0.993527508090615 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
24619665 24619665 PRJNA348537_S_NODE_3140_length_175_cov_2.242857_g3094_i0 PRJNA348537 3140 175 2.242857 3.92499975 Gallus gallus 9031 Chordata Chordata 324 2.83e-84   NTclustered gi|1043916077|gb|AC275295.1| 9031 g3094 i0 100 99.5371428571429 175 0 100 0 1 175 129428 129254 Gallus gallus BAC clone J_AA057O15 from chromosome unknown, complete sequence blastn 17419 324 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
28938058 28938058 PRJNA348537_S_NODE_4528_length_152_cov_2.410256_g4482_i0 PRJNA348537 4528 152 2.410256 3.66358912 Hyla sarda 327740 Chordata Chordata 60.1 6.41e-9   NR XP_056389893.1 327740 g4482 i0 71.1 4.77631578947368 38 10 73 1 39 149 164 201 XP_056389893.1 ORM1-like protein 1 isoform X1 [Hyla sarda] diamond 726 60.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Hyla Hyla sarda
29253460 29253460 PRJNA348537_S_NODE_569_length_364_cov_5.231003_g523_i0 PRJNA348537 569 364 5.231003 19.04085092 Erpetoichthys calabaricus 27687 Chordata Chordata 139 2.9199999999999996e-37   NR XP_051791274.1 27687 g523 i0 78.3 5.30769230769231 92 19 75 1 20 292 115 206 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 1932 139 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;