RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA348537", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA348537 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4898287 4898287 PRJNA348537_S_NODE_3524_length_167_cov_3.060606_g3478_i0 PRJNA348537 3524 167 3.060606 5.11121202 Bacteriovorax 146784 Bacteria Bacteria 248 1.66e-61   NTclustered gi|1700689994|gb|CP030035.1| 960 g3478 i0 93.413 444.640718562874 167 11 100 0 1 167 1661922 1662088 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 74255 248 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
13823894 13823894 PRJNA348537_S_NODE_2751_length_185_cov_3.346667_g2705_i0 PRJNA348537 2751 185 3.346667 6.19133395 Bdellovibrio 958 Bacteria Bacteria 174 3.23e-39   NTclustered gi|578016248|gb|CP002190.1| 765869 g2705 i0 87.919 176.183783783784 149 16 81 2 37 185 611717 611571 Bdellovibrio bacteriovorus W, complete genome blastn 32594 174 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
18921893 18921893 PRJNA348537_S_NODE_1715_length_224_cov_4.243386_g1669_i0 PRJNA348537 1715 224 4.243386 9.50518464 Bdellovibrio 958 Bacteria Bacteria 302 1.79e-77   NTclustered gi|578016248|gb|CP002190.1| 765869 g1669 i0 91.071 165.334821428571 224 19 99 1 1 223 611178 610955 Bdellovibrio bacteriovorus W, complete genome blastn 37035 302 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
20196495 20196495 PRJNA348537_S_NODE_1516_length_237_cov_2.366337_g1470_i0 PRJNA348537 1516 237 2.366337 5.60821869 Bacteriovorax 146784 Bacteria Bacteria 322 1.47e-83   NTclustered gi|1700689994|gb|CP030035.1| 960 g1470 i0 91.775 47.2784810126582 231 19 97 0 1 231 1661805 1661575 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 11205 322 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;