RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA348537", tax_clade = "Sar" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA348537 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15098221 15098221 PRJNA348537_S_NODE_1352_length_250_cov_4.362791_g1306_i0 PRJNA348537 1352 250 4.362791 10.9069775 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 451 1.91e-122   NTclustered gi|573007512|gb|AY598619.2| 289596 g1306 i0 99.2 98.796 250 2 100 0 1 250 3243 2994 Pythium adhaerens strain CBS 520.74 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 24699 451 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium adhaerens
15098230 15098230 PRJNA348537_S_NODE_2752_length_185_cov_3.306667_g2706_i0 PRJNA348537 2752 185 3.306667 6.11733395 root 1 Root_unresolved Root_unresolved 278 2.39e-70   NTclustered gi|2248513641|ref|NC_063810.1| 4795 g2706 i0 94.054 104.27027027027 185 7 100 3 1 185 5689 5509 Phytophthora megakarya isolate Pm2 mitochondrion, complete genome blastn 19290 279 0.996415770609319 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megakarya
16372983 16372983 PRJNA348537_S_NODE_2753_length_185_cov_3.000000_g2707_i0 PRJNA348537 2753 185 3 5.55 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 342 8.369999999999999e-90   NTclustered gi|51235482|gb|AY598628.1| 82932 g2707 i0 100 100.005405405405 185 0 100 0 1 185 1796 1612 Pythium arrhenomanes strain CBS 324.62 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 18501 342 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium arrhenomanes
18245078 18245078 PRJNA348537_S_NODE_3215_length_173_cov_9.173913_g3169_i0 PRJNA348537 3215 173 9.173913 15.87086949 Pythium monospermum 92964 SAR_Eukaryotes SAR_Eukaryotes 309 7.81e-80   NTclustered gi|33520250|gb|AY273995.1| 92964 g3169 i0 98.844 98.0520231213873 173 2 100 0 1 173 77 249 Pythium monospermum large subunit ribosomal RNA gene, partial sequence blastn 16963 309 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium monospermum
21472145 21472145 PRJNA348537_S_NODE_2717_length_186_cov_3.655629_g2671_i0 PRJNA348537 2717 186 3.655629 6.79946994 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 335 1.4099999999999996e-87   NTclustered gi|2832795190|gb|PQ465262.1| 88834 g2671 i0 99.457 99.258064516129 184 1 99 0 3 186 2589 2772 Pythium porphyrae isolate Bangia fuscopurpurea small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 18462 335 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium porphyrae
24619664 24619664 PRJNA348537_S_NODE_2940_length_180_cov_3.193103_g2894_i0 PRJNA348537 2940 180 3.193103 5.7475854 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 279 6.43e-71   NTclustered gi|937408816|ref|NC_027966.1| 114742 g2894 i0 94.536 105.844444444444 183 7 100 1 1 180 11137 11319 Pythium insidiosum mitochondrial DNA, complete genome blastn 19052 279 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;