RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA348537", tax_clade = "Opisthokonta" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA348537 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1668149 1668149 PRJNA348537_S_NODE_3142_length_175_cov_1.992857_g3096_i0 PRJNA348537 3142 175 1.992857 3.48749975 Allomyces macrogynus 28583 Fungi Fungi 270 3.739999999999999e-68   NTclustered gi|11467573|ref|NC_001715.1| 28583 g3096 i0 99.329 1.38285714285714 149 1 85 0 1 149 1718 1570 Allomyces macrogynus mitochondrion, complete genome blastn 242 270 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces macrogynus
2944137 2944137 PRJNA348537_S_NODE_2063_length_207_cov_13.726744_g2017_i0 PRJNA348537 2063 207 13.726744 28.41436008 Allomyces arbusculus 64504 Fungi Fungi 278 2.75e-70   NTclustered gi|1405239019|ref|NG_027623.1| 64504 g2017 i0 96.45 57.5942028985507 169 4 82 1 39 207 1685 1851 Allomyces arbusculus UCBMG Brasil 2 28S rRNA gene, partial sequence; from reference material blastn 11922 278 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces arbusculus
9321501 9321501 PRJNA348537_S_NODE_3088_length_176_cov_4.609929_g3042_i0 PRJNA348537 3088 176 4.609929 8.11347504 Allomyces macrogynus 28583 Fungi Fungi 274 2.9099999999999997e-69   NTclustered gi|11467573|ref|NC_001715.1| 28583 g3042 i0 94.444 1.53977272727273 180 6 100 2 1 176 415 594 Allomyces macrogynus mitochondrion, complete genome blastn 271 274 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces macrogynus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;