RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA348537", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA348537 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1668147 1668147 PRJNA348537_S_NODE_2722_length_186_cov_2.509934_g2676_i0 PRJNA348537 2722 186 2.509934 4.66847724 uncultured Naegleria 229031 Heterolobosea other_Eukaryota 344 2.34e-90   NTclustered gi|2206187049|gb|OM946712.1| 229031 g2676 i0 100 99.8172043010753 186 0 100 0 1 186 224 39 Uncultured Naegleria clone STP_A-OC-42 small subunit ribosomal RNA gene, partial sequence blastn 18566 344 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae   uncultured Naegleria
8722987 8722987 PRJNA348537_S_NODE_3987_length_159_cov_2.596774_g3941_i0 PRJNA348537 3987 159 2.596774 4.12887066 Naegleria 5761 Heterolobosea other_Eukaryota 244 2.02e-60   NTclustered gi|2618963742|gb|OR769034.1| 5762 g3941 i0 95.425 36.4276729559748 153 7 96 0 7 159 3951 4103 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 5792 246 0.991869918699187 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
20196504 20196504 PRJNA348537_S_NODE_4376_length_154_cov_2.411765_g4330_i0 PRJNA348537 4376 154 2.411765 3.7141181 Naegleria 5761 Heterolobosea other_Eukaryota 263 5.36e-66   NTclustered gi|2210333082|gb|ON036165.1| 36335 g4330 i0 100 92.7987012987013 142 0 92 0 1 142 57 198 Naegleria jamiesoni isolate SG-07 internal transcribed spacer region, partial sequence blastn 14291 263 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria jamiesoni
20794884 20794884 PRJNA348537_S_NODE_4277_length_155_cov_2.583333_g4231_i0 PRJNA348537 4277 155 2.583333 4.00416615 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 259 7e-65   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g4231 i0 96.774 13.0064516129032 155 5 100 0 1 155 2090 2244 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 2016 259 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;