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contig_metadata

14 rows where bioproject = "PRJNA345071" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 14 ✖

tax_clade 1

bioproject 1

  • PRJNA345071 · 14 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4898253 4898253 PRJNA345071_P_NODE_8384_length_250_cov_0.881356_g8344_i0 PRJNA345071 8384 250 0.881356 2.20339 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 219 2.11e-52   NTclustered gi|2795025992|ref|XM_067924992.1| 4785 g8344 i0 82.996 79.084 247 36 98 6 7 250 693 936 Phytophthora cinnamomi chaperonin GroL (IUM83_01160), partial mRNA blastn 19771 219 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
6771088 6771088 PRJNA345071_P_NODE_9066_length_248_cov_0.891429_g9026_i0 PRJNA345071 9066 248 0.891429 2.21074392 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 144 1.71e-39   NR DAZ97811.1 4803 g9026 i0 80.5 38.6854838709677 82 16 99.2 0 247 2 269 350 DAZ97811.1 TPA: hypothetical protein N0F65_002481 [Lagenidium giganteum] diamond 9594 145 0.993103448275862 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
9998551 9998551 PRJNA345071_P_NODE_1808_length_416_cov_3.518950_g1768_i0 PRJNA345071 1808 416 3.51895 14.638832 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 278 6.060000000000001e-70   NTclustered gi|23394353|gb|AF424642.1| 4787 g1768 i0 80.886 50.9855769230769 361 62 86 5 53 411 144 499 Phytophthora infestans clone MY-03-E-01 ADP/ATP translocase mRNA, complete cds blastn 21210 278 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
10597150 10597150 PRJNA345071_P_NODE_7409_length_255_cov_1.318681_g7369_i0 PRJNA345071 7409 255 1.318681 3.36263655 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 149 9.31e-41   NR GLD93518.1 114742 g7369 i0 90.5 5.87058823529412 84 8 98.8 0 2 253 57 140 GLD93518.1 hypothetical protein PINS_up002110 [Pythium insidiosum] diamond 1497 149 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
20794820 20794820 PRJNA345071_P_NODE_7577_length_253_cov_1.405556_g7537_i0 PRJNA345071 7577 253 1.405556 3.55605668 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 123 2.22e-30   NR KAJ8525774.1 4785 g7537 i0 73.8 36.8300395256917 84 22 99.6 0 252 1 662 745 KAJ8525774.1 hypothetical protein ON010_g15340 [Phytophthora cinnamomi] diamond 9318 124 0.991935483870968 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
27927610 27927610 PRJNA345071_P_NODE_10965_length_239_cov_2.704819_g10925_i0 PRJNA345071 10965 239 2.704819 6.46451741 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 73.6 4.85e-13   NR RHY26857.1 157072 g10925 i0 53.8 0.97907949790795 78 21 96.7 3 231 1 48 111 RHY26857.1 hypothetical protein DYB32_007280 [Aphanomyces invadans] diamond 234 73.6 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
28938055 28938055 PRJNA345071_P_NODE_8648_length_249_cov_0.886364_g8608_i0 PRJNA345071 8648 249 0.886364 2.20704636 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 47 0.0013   NR GLE06415.1 114742 g8608 i0 38.6 0.843373493975904 70 36 84.3 3 222 13 256 318 GLE06415.1 hypothetical protein PINS_up015662 [Pythium insidiosum] diamond 210 47 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
29600718 29600718 PRJNA345071_P_NODE_10250_length_244_cov_0.912281_g10210_i0 PRJNA345071 10250 244 0.912281 2.22596564 Lagenidium giganteum 4803 SAR_Eukaryotes SAR_Eukaryotes 52 2.06e-5   NR DAZ99424.1 4803 g10210 i0 50 2.13934426229508 58 21 61.5 1 152 3 170 227 DAZ99424.1 TPA: LOW QUALITY PROTEIN: hypothetical protein N0F65_004057, partial [Lagenidium giganteum] diamond 522 52 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
30502726 30502726 PRJNA345071_P_NODE_5193_length_287_cov_1.457944_g5153_i0 PRJNA345071 5193 287 1.457944 4.18429928 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 167 6.969999999999999e-46   NR KAJ8533370.1 4785 g5153 i0 76.8 16.9128919860627 95 22 99.3 0 1 285 581 675 KAJ8533370.1 hypothetical protein ON010_g13884 [Phytophthora cinnamomi] diamond 4854 167 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
30913599 30913599 PRJNA345071_P_NODE_7734_length_253_cov_0.866667_g7694_i0 PRJNA345071 7734 253 0.866667 2.19266751 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 114 8.19e-28   NR RHY29595.1 157072 g7694 i0 56 1.9802371541502 84 37 99.6 0 1 252 56 139 RHY29595.1 hypothetical protein DYB32_005022 [Aphanomyces invadans] diamond 501 114 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
30945156 30945156 PRJNA345071_P_NODE_2554_length_365_cov_2.815068_g2514_i0 PRJNA345071 2554 365 2.815068 10.2749982 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 123 1.02e-33   NR CCI49799.1 65357 g2514 i0 71.4 2.76986301369863 84 22 67.4 1 2 247 19 102 CCI49799.1 unnamed protein product [Albugo candida] diamond 1011 123 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
31356058 31356058 PRJNA345071_P_NODE_7856_length_252_cov_0.871508_g7816_i0 PRJNA345071 7856 252 0.871508 2.19620016 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 43.9 0.0159   NR TMW56549.1 41045 g7816 i0 30.7 4.15476190476191 75 51 89.3 1 226 2 340 413 TMW56549.1 hypothetical protein Poli38472_006559 [Pythium oligandrum] diamond 1047 43.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
31939586 31939586 PRJNA345071_P_NODE_7637_length_253_cov_0.866667_g7597_i0 PRJNA345071 7637 253 0.866667 2.19266751 Aphanomyces cochlioides 112091 SAR_Eukaryotes SAR_Eukaryotes 73.9 4.16e-13   NR KAG9400770.1 112091 g7597 i0 48.8 2.32411067193676 84 34 99.6 3 1 252 315 389 KAG9400770.1 hypothetical protein AC1031_010208 [Aphanomyces cochlioides] diamond 588 73.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces cochlioides
32603992 32603992 PRJNA345071_P_NODE_3940_length_314_cov_1.639004_g3900_i0 PRJNA345071 3940 314 1.639004 5.14647256 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 92.4 3.07e-19   NR TMW67703.1 41045 g3900 i0 53 4.55732484076433 83 39 79.3 0 20 268 174 256 TMW67703.1 hypothetical protein Poli38472_011323 [Pythium oligandrum] diamond 1431 92.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;