RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA345071" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA345071 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26694802 26694802 PRJNA345071_P_NODE_9861_length_245_cov_0.906977_g9821_i0 PRJNA345071 9861 245 0.906977 2.22209365 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 42.7 0.032   NR HEY6220477.1 2026741 g9821 i0 34.6 0.955102040816327 78 47 95.5 2 1 234 1 74 HEY6220477.1 YoaK family protein [Gemmatimonadaceae bacterium] diamond 234 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29537791 29537791 PRJNA345071_P_NODE_10830_length_242_cov_0.923077_g10790_i0 PRJNA345071 10830 242 0.923077 2.23384634 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 63.9 1.28e-9   NR HEU4996224.1 2026741 g10790 i0 51.3 1.89669421487603 78 36 96.7 1 239 6 1209 1284 HEU4996224.1 invasin domain 3-containing protein [Gemmatimonadaceae bacterium] diamond 459 63.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;