RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA345071" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA345071 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20196468 20196468 PRJNA345071_P_NODE_6736_length_263_cov_2.978947_g6696_i0 PRJNA345071 6736 263 2.978947 7.83463061 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 70.9 1.24e-13   NR HUS04010.1 2026734 g6696 i0 68.9 10.3117870722433 45 14 51.3 0 174 40 3 47 HUS04010.1 zinc-ribbon domain containing protein [Dehalococcoidia bacterium] diamond 2712 70.9 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
27391026 27391026 PRJNA345071_P_NODE_8083_length_251_cov_1.606742_g8043_i0 PRJNA345071 8083 251 1.606742 4.03292242 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 77.8 3.92e-15   NR MCS5642198.1 2026734 g8043 i0 49.4 1.9840637450199201 83 41 98 1 5 250 130 212 MCS5642198.1 hypothetical protein [Dehalococcoidia bacterium] diamond 498 77.8 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
31718291 31718291 PRJNA345071_P_NODE_4677_length_296_cov_1.300448_g4637_i0 PRJNA345071 4677 296 1.300448 3.84932608 Anaerolineae bacterium 2052143 Bacteria Bacteria 78.2 2.48e-14   NR PWH11942.1 2052143 g4637 i0 46.8 3.9222972972973 94 39 95.3 1 282 1 290 372 PWH11942.1 MAG: peptidase S8 [Anaerolineae bacterium] diamond 1161 78.2 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
31988478 31988478 PRJNA345071_P_NODE_6558_length_266_cov_1.310881_g6518_i0 PRJNA345071 6558 266 1.310881 3.48694346 Bacteria 2 Bacteria Bacteria 49.3 2.22e-4   NR MFC1936709.1 2026724 g6518 i0 33.3 2.23308270676692 99 51 98.1 2 265 5 205 300 MFC1936709.1 kinase/pyrophosphorylase [Chloroflexota bacterium] diamond 594 49.7 0.991951710261569 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
32841407 32841407 PRJNA345071_P_NODE_3620_length_324_cov_1.239044_g3580_i0 PRJNA345071 3620 324 1.239044 4.01450256 Bacteria 2 Bacteria Bacteria 140 4.36e-39   NR HBY95842.1 2026724 g3580 i0 61.9 2.91666666666667 105 40 97.2 0 317 3 74 178 HBY95842.1 threonine aldolase [Chloroflexota bacterium] diamond 945 140 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;