RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA345071", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA345071 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20794672 20794672 PRJNA345071_P_NODE_1557_length_443_cov_2.197297_g1517_i0 PRJNA345071 1557 443 2.197297 9.73402571 Maridesulfovibrio sp. 2795000 Bacteria Bacteria 56.5 0.003   NTclustered gi|2621784475|emb|OY780933.1| 2795000 g1517 i0 89.13 0.230248306997743 46 3 10 2 30 74 2462535 2462491 MAG: Maridesulfovibrio sp. isolate 689ab4ac-13ae-4e01-b39b-c4f5232e5781 genome assembly, chromosome: 1 blastn 102 56.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Maridesulfovibrio Maridesulfovibrio sp.
28559250 28559250 PRJNA345071_P_NODE_9267_length_247_cov_0.896552_g9227_i0 PRJNA345071 9267 247 0.896552 2.21448344 Syntrophorhabdales bacterium 2819264 Bacteria Bacteria 62.4 4.34e-9   NR HUJ88705.1 2819264 g9227 i0 41.8 0.813765182186235 67 39 81.4 0 240 40 304 370 HUJ88705.1 glutamate 5-kinase [Syntrophorhabdales bacterium] diamond 201 62.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophorhabdia Syntrophorhabdales     Syntrophorhabdales bacterium
32761386 32761386 PRJNA345071_P_NODE_9000_length_248_cov_0.891429_g8960_i0 PRJNA345071 9000 248 0.891429 2.21074392 Desulfovermiculus halophilus 339722 Bacteria Bacteria 69.3 4.64e-12   NR WP_027370750.1 339722 g8960 i0 72.1 1.58467741935484 43 12 52 0 248 120 176 218 WP_027370750.1 adenylate kinase [Desulfovermiculus halophilus] diamond 393 69.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfohalobiaceae Desulfovermiculus Desulfovermiculus halophilus
32809993 32809993 PRJNA345071_P_NODE_9980_length_245_cov_0.906977_g9940_i0 PRJNA345071 9980 245 0.906977 2.22209365 Bacteria 2 Bacteria Bacteria 50.4 7.18e-5   NR MBL0715523.1 2044940 g9940 i0 41.2 3.11020408163265 85 39 98 4 4 243 26 104 MBL0715523.1 hypothetical protein [Desulfobacterales bacterium] diamond 762 50.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;