RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA345071" and tax_kingdom = "Methanobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 2 ✖

bioproject 1

  • PRJNA345071 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9321438 9321438 PRJNA345071_P_NODE_8148_length_251_cov_0.876404_g8108_i0 PRJNA345071 8148 251 0.876404 2.19977404 Haloplanus sp. GX21 3127120 Archaea Archaea 52.8 0.023   NTclustered gi|2700851762|gb|CP147874.1| 3127120 g8108 i0 100 0.111553784860558 28 0 11 0 161 188 177848 177821 Haloplanus sp. GX21 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloplanus Haloplanus sp. GX21
30896393 30896393 PRJNA345071_P_NODE_10154_length_244_cov_0.912281_g10114_i0 PRJNA345071 10154 244 0.912281 2.22596564 Methanobrevibacter sp. 66852 Archaea Archaea 51.2 3.85e-5   NR MBR3139444.1 66852 g10114 i0 37.8 3.31967213114754 82 45 97.1 3 2 238 283 361 MBR3139444.1 LicD family protein [Methanobrevibacter sp.] diamond 810 51.2 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;