RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA345071", tax_clade = "PVC group" and tax_phylum = "Kiritimatiellota"

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tax_superkingdom 1

tax_phylum 1

  • Kiritimatiellota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA345071 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27060348 27060348 PRJNA345071_P_NODE_3442_length_330_cov_1.194553_g3402_i0 PRJNA345071 3442 330 1.194553 3.9420249 Pseudomonadati 3379134 Bacteria Bacteria 113 5.08e-27   NR MFT7518666.1 2212473 g3402 i0 60.6 3.60909090909091 109 39 99.1 2 2 328 43 147 MFT7518666.1 acetyl-CoA acyltransferase [Kiritimatiellia bacterium] diamond 1191 114 0.991228070175439 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
27959144 27959144 PRJNA345071_P_NODE_7005_length_260_cov_1.545455_g6965_i0 PRJNA345071 7005 260 1.545455 4.018183 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 51.2 4.78e-5   NR MFA5042876.1 2212473 g6965 i0 48.1 0.623076923076923 54 28 62.3 0 89 250 249 302 MFA5042876.1 ATP-binding protein [Kiritimatiellia bacterium] diamond 162 51.2 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;