RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA345071" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA345071 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7448269 7448269 PRJNA345071_P_NODE_5266_length_286_cov_1.455399_g5226_i0 PRJNA345071 5266 286 1.455399 4.16244114 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 102 4.77e-23   NR PRP88370.1 1890364 g5226 i0 57.1 0.954545454545455 91 39 95.5 0 12 284 93 183 PRP88370.1 AAA ATPase domain-containing protein [Planoprotostelium fungivorum] diamond 273 102 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
23345322 23345322 PRJNA345071_P_NODE_6459_length_267_cov_1.927835_g6419_i0 PRJNA345071 6459 267 1.927835 5.14731945 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 54.7 0.007   NTclustered gi|470503743|ref|XM_004347717.1| 1257118 g6419 i0 100 0.108614232209738 29 0 11 0 211 239 70 42 Acanthamoeba castellanii str. Neff ATPase, AAA domain containing protein (ACA1_046550), partial mRNA blastn 29 54.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
26662946 26662946 PRJNA345071_P_NODE_9841_length_245_cov_0.906977_g9801_i0 PRJNA345071 9841 245 0.906977 2.22209365 Dictyostelium purpureum 5786 Evosea other_Eukaryota 53.1 6.17e-6   NR XP_003284473.1 5786 g9801 i0 60.5 0.52653061224489806 43 15 52.7 1 241 113 195 235 XP_003284473.1 Rab GTPase [Dictyostelium purpureum] diamond 129 53.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
27043154 27043154 PRJNA345071_P_NODE_4182_length_308_cov_1.272340_g4142_i0 PRJNA345071 4182 308 1.27234 3.9188072 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 68.9 4.29e-11   NR KAH3743020.1 1580589 g4142 i0 54.9 1.52922077922078 51 23 49.7 0 254 102 325 375 KAH3743020.1 glycosyl family 43 [Pelomyxa schiedti] diamond 471 68.9 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
27359405 27359405 PRJNA345071_P_NODE_6483_length_267_cov_1.386598_g6443_i0 PRJNA345071 6483 267 1.386598 3.70221666 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 93.6 1.42e-20   NR PRP81086.1 1890364 g6443 i0 54.9 0.921348314606742 82 37 92.1 0 247 2 28 109 PRP81086.1 hypothetical protein PROFUN_11200 [Planoprotostelium fungivorum] diamond 246 93.6 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
28779958 28779958 PRJNA345071_P_NODE_547_length_667_cov_2.244108_g507_i0 PRJNA345071 547 667 2.244108 14.96820036 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 152 3.5e-40   NR KAH3767505.1 1580589 g507 i0 43.5 1.96101949025487 216 117 96.7 4 651 7 196 407 KAH3767505.1 peptidyl-prolyl cis-trans isomerase FKBP4 [Pelomyxa schiedti] diamond 1308 152 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
32904396 32904396 PRJNA345071_P_NODE_7740_length_253_cov_0.866667_g7700_i0 PRJNA345071 7740 253 0.866667 2.19266751 Eumycetozoa 142796 Evosea other_Eukaryota 56.2 1.78e-7   NR KAF2074068.1 133409 g7700 i0 38.2 2.05138339920949 89 39 97.2 3 7 252 19 98 KAF2074068.1 hypothetical protein CYY_004637 [Polysphondylium violaceum] diamond 519 56.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;