RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA342843" and tax_superkingdom = "Archaea"

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analysis 2

tax_superkingdom 1

  • Archaea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA342843 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15098095 15098095 PRJNA342843_S_NODE_12792_length_169_cov_1.031250_g12642_i0 PRJNA342843 12792 169 1.03125 1.7428125 root 1 Root_unresolved Root_unresolved 313 5.859999999999999e-81   NTclustered gi|2515741548|gb|CP117271.1| 2209 g12642 i0 100 101 169 0 100 0 1 169 3941731 3941899 Mutant Methanosarcina mazei strain Mm Mut 208, complete genome blastn 17069 313 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei
28369545 28369545 PRJNA342843_S_NODE_15066_length_154_cov_0.973451_g14916_i0 PRJNA342843 15066 154 0.973451 1.49911454 Sulfolobaceae archaeon 2967306 Archaea Archaea 77.4 2.48e-16   NR MEM0173165.1 2967306 g14916 i0 82.6 0.896103896103896 46 7 89.6 1 17 154 100 144 MEM0173165.1 hypothetical protein [Sulfolobaceae archaeon] diamond 138 77.4 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae   Sulfolobaceae archaeon
29460018 29460018 PRJNA342843_S_NODE_5710_length_279_cov_2.130252_g5560_i0 PRJNA342843 5710 279 2.130252 5.94340308 root 1 Root_unresolved Root_unresolved 54.7 3.37e-6   NR MEK6984635.1 2026764 g5560 i0 50 1.25806451612903 52 26 55.9 0 157 2 279 330 MEK6984635.1 hypothetical protein [Nanoarchaeota archaeon] diamond 351 54.7 1 Archaea   Nanobdellati Nanobdellota         Nanobdellota archaeon
30864533 30864533 PRJNA342843_S_NODE_10434_length_192_cov_1.165563_g10284_i0 PRJNA342843 10434 192 1.165563 2.23788096 Sulfolobaceae archaeon 2967306 Archaea Archaea 119 1.15e-31   NR MEM0173167.1 2967306 g10284 i0 90.5 0.984375 63 6 98.4 0 190 2 63 125 MEM0173167.1 hypothetical protein [Sulfolobaceae archaeon] diamond 189 119 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae   Sulfolobaceae archaeon
31356054 31356054 PRJNA342843_S_NODE_4716_length_316_cov_1.952727_g4566_i0 PRJNA342843 4716 316 1.952727 6.17061732 root 1 Root_unresolved Root_unresolved 51.6 6.73e-5   NR MDY0385978.1 1874737 g4566 i0 38.5 2.30696202531646 52 32 49.4 0 4 159 10 61 MDY0385978.1 hypothetical protein [Methanolobus sp.] diamond 729 52 0.992307692307692 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanolobus Methanolobus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;