RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA342843", tax_phylum = "Thermomicrobiota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Thermomicrobiota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA342843 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6173180 6173180 PRJNA342843_S_NODE_13565_length_163_cov_1.704918_g13415_i0 PRJNA342843 13565 163 1.704918 2.77901634 Sphaerobacter 2056 Bacteria Bacteria 189 9.92e-44   NTclustered gi|470485500|ref|NR_076704.1| 2057 g13415 i0 89.404 684.533742331288 151 14 93 2 13 163 2807 2659 Sphaerobacter thermophilus strain S 6022 23S ribosomal RNA gene, complete sequence blastn 111579 189 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus
7448209 7448209 PRJNA342843_S_NODE_5026_length_304_cov_2.171103_g4876_i0 PRJNA342843 5026 304 2.171103 6.60015312 Sphaerobacter 2056 Bacteria Bacteria 239 2.03e-58   NTclustered gi|470485500|ref|NR_076704.1| 2057 g4876 i0 82.867 32.5953947368421 286 29 89 12 34 304 297 17 Sphaerobacter thermophilus strain S 6022 23S ribosomal RNA gene, complete sequence blastn 9909 239 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;