RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA342843" and tax_phylum = "Thermodesulfobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA342843 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27439906 27439906 PRJNA342843_S_NODE_11523_length_180_cov_1.330935_g11373_i0 PRJNA342843 11523 180 1.330935 2.395683 root 1 Root_unresolved Root_unresolved 54.7 9.27e-7   NR MCP3925531.1 2044940 g11373 i0 50 1.55 44 22 73.3 0 34 165 38 81 MCP3925531.1 hypothetical protein [Desulfobacterales bacterium] diamond 279 55.1 0.992740471869329 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
27895906 27895906 PRJNA342843_S_NODE_12885_length_168_cov_1.590551_g12735_i0 PRJNA342843 12885 168 1.590551 2.67212568 Desulfovibrio desulfuricans 876 Bacteria Bacteria 41.2 0.00519   NR WP_323390757.1 876 g12735 i0 43.2 0.660714285714286 37 21 66.1 0 41 151 1 37 WP_323390757.1 hypothetical protein [Desulfovibrio desulfuricans] diamond 111 41.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans
32477780 32477780 PRJNA342843_S_NODE_12519_length_171_cov_1.284615_g12369_i0 PRJNA342843 12519 171 1.284615 2.19669165 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 48.1 1.73e-4   NR MEE9614687.1 2202153 g12369 i0 46.9 0.859649122807018 49 20 86 2 6 152 369 411 MEE9614687.1 tetratricopeptide repeat protein [Thermodesulfobacteriota bacterium] diamond 147 48.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;