RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA342843" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA342843 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26726171 26726171 PRJNA342843_S_NODE_10821_length_187_cov_1.493151_g10671_i0 PRJNA342843 10821 187 1.493151 2.79219237 Helicobacter pylori 210 Bacteria Bacteria 64.3 4.8e-12   NR GAA9176259.1 210 g10671 i0 71.4 0.67379679144385 42 11 65.8 1 14 136 8 49 GAA9176259.1 hypothetical protein Kyoto193A_0410 [Helicobacter pylori] diamond 126 64.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28590788 28590788 PRJNA342843_S_NODE_6427_length_259_cov_12.495413_g6277_i0 PRJNA342843 6427 259 12.495413 32.36311967 Helicobacter pylori 210 Bacteria Bacteria 67.8 6.78e-13   NR GAA9036680.1 210 g6277 i0 93.9 0.382239382239382 33 2 38.2 0 3 101 5 37 GAA9036680.1 hypothetical protein Kyoto181A_9030 [Helicobacter pylori] diamond 99 67.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31370575 31370575 PRJNA342843_S_NODE_12196_length_174_cov_1.135338_g12046_i0 PRJNA342843 12196 174 1.135338 1.97548812 Helicobacter pylori 210 Bacteria Bacteria 48.9 5.6e-6   NR GAA6901948.1 210 g12046 i0 87.5 1.20689655172414 24 3 41.4 0 174 103 31 54 GAA6901948.1 hypothetical protein Kyoto207A_1720 [Helicobacter pylori] diamond 210 48.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;