RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA342843" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA342843 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10596718 10596718 PRJNA342843_S_NODE_4149_length_343_cov_2.705298_g3999_i0 PRJNA342843 4149 343 2.705298 9.27917214 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 586 7.189999999999997e-163   NTclustered gi|820695469|tpe|LN714488.1| 572307 g3999 i0 97.661 61.6034985422741 342 7 100 1 3 343 116420 116761 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 21130 586 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
11871372 11871372 PRJNA342843_S_NODE_10130_length_195_cov_1.707792_g9980_i0 PRJNA342843 10130 195 1.707792 3.3301944 Eimeria tenella 5802 SAR_Eukaryotes SAR_Eukaryotes 63.9 7.78e-6   NTclustered gi|916418629|ref|XM_013375092.1| 5802 g9980 i0 95 3.46153846153846 40 2 21 0 127 166 624 663 Eimeria tenella PIK3R4 kinase-related protein (incomplete catalytic triad), putative (ETH_00036660), partial mRNA blastn 675 63.9 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria tenella
19518986 19518986 PRJNA342843_S_NODE_8916_length_212_cov_1.081871_g8766_i0 PRJNA342843 8916 212 1.081871 2.29356652 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 147 8.309999999999999e-31   NTclustered gi|820695469|tpe|LN714488.1| 572307 g8766 i0 81.081 6.56603773584906 185 34 87 1 28 212 96429 96246 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 1392 147 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
20794398 20794398 PRJNA342843_S_NODE_4117_length_345_cov_1.819079_g3967_i0 PRJNA342843 4117 345 1.819079 6.27582255 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 584 2.6e-162   NTclustered gi|820695469|tpe|LN714488.1| 572307 g3967 i0 97.647 5.13623188405797 340 8 99 0 6 345 117205 117544 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 1772 584 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;