RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA340009" and tax_phylum = "candidate division WWE3"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • candidate division WWE3 · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA340009 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29222247 29222247 PRJNA340009_P_NODE_27769_length_234_cov_9.740541_g27462_i0 PRJNA340009 27769 234 9.740541 22.79286594 candidate division WWE3 bacterium CG 422282 Bacteria Bacteria 71.2 2.99e-12   NR PIS22839.1 1975084 g27462 i0 64 1.87179487179487 50 18 64.1 0 198 49 120 169 PIS22839.1 MAG: translation initiation factor IF-2 [candidate division WWE3 bacterium CG08_land_8_20_14_0_20_40_13] diamond 438 71.2 1 Bacteria Bacteria candidate phyla   candidate division WWE3         candidate division WWE3 bacterium CG08_land_8_20_14_0_20_40_13
29442854 29442854 PRJNA340009_P_NODE_43010_length_195_cov_1.828767_g42703_i0 PRJNA340009 43010 195 1.828767 3.56609565 candidate division WWE3 bacterium RIFCSPHIGHO2_ 2053526 Bacteria Bacteria 122 2.41e-30   NR OGC45754.1 1802615 g42703 i0 90.6 0.984615384615385 64 6 98.5 0 193 2 33 96 OGC45754.1 MAG: DNA mismatch repair protein MutS [candidate division WWE3 bacterium RIFCSPHIGHO2_01_FULL_38_45] diamond 192 122 1 Bacteria Bacteria candidate phyla   candidate division WWE3         candidate division WWE3 bacterium RIFCSPHIGHO2_01_FULL_38_45
30896345 30896345 PRJNA340009_P_NODE_44814_length_191_cov_15.830986_g44507_i0 PRJNA340009 44814 191 15.830986 30.23718326 candidate division WWE3 bacterium 2053526 Bacteria Bacteria 80.9 4.88e-16   NR MDP1710785.1 2053526 g44507 i0 55 3.65968586387435 60 27 94.2 0 187 8 240 299 MDP1710785.1 hypothetical protein [candidate division WWE3 bacterium] diamond 699 80.9 1 Bacteria Bacteria candidate phyla   candidate division WWE3         candidate division WWE3 bacterium
32855745 32855745 PRJNA340009_P_NODE_63240_length_166_cov_52.547009_g62933_i0 PRJNA340009 63240 166 52.547009 87.22803494 candidate division WWE3 bacterium 2053526 Bacteria Bacteria 70.1 2.28e-12   NR NMB70215.1 2053526 g62933 i0 68 0.903614457831325 50 16 90.4 0 16 165 28 77 NMB70215.1 peptide chain release factor 2 [candidate division WWE3 bacterium] diamond 150 70.1 1 Bacteria Bacteria candidate phyla   candidate division WWE3         candidate division WWE3 bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;