RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA340009" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA340009 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
392188 392188 PRJNA340009_P_NODE_37601_length_206_cov_6.363057_g37294_i0 PRJNA340009 37601 206 6.363057 13.10789742 Saccamoeba sp. SC007 266052 Tubulinea other_Eukaryota 198 2.19e-46   NTclustered gi|45386047|gb|AY549565.1| 266052 g37294 i0 97.414 53.126213592233 116 3 56 0 91 206 418 303 Saccamoeba sp. SC007 18S ribosomal RNA gene, partial sequence blastn 10944 198 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. SC007
4219337 4219337 PRJNA340009_P_NODE_30744_length_224_cov_50.091429_g30437_i0 PRJNA340009 30744 224 50.091429 112.20480096 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 165 2.4500000000000002e-36   NTclustered gi|511487963|gb|JX898537.1| 1260765 g30437 i0 85.03 5.4375 167 20 74 5 47 211 439 276 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 1218 165 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
6769848 6769848 PRJNA340009_P_NODE_44986_length_191_cov_2.859155_g44679_i0 PRJNA340009 44986 191 2.859155 5.46098605 Tubulinea sp. 4388 1216001 Tubulinea other_Eukaryota 222 1.18e-53   NTclustered gi|399764265|gb|JQ271776.1| 1216001 g44679 i0 98.425 4.24083769633508 127 1 93 1 1 127 935 810 Tubulinea sp. 4388 18S ribosomal RNA gene, partial sequence blastn 810 222 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea sp. 4388
14421064 14421064 PRJNA340009_P_NODE_51172_length_181_cov_61.060606_g50865_i0 PRJNA340009 51172 181 61.060606 110.51969686 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 169 1.4599999999999998e-37   NTclustered gi|511487963|gb|JX898537.1| 1260765 g50865 i0 85.714 11.7955801104972 161 21 89 2 8 168 282 124 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 2135 169 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
20196268 20196268 PRJNA340009_P_NODE_77616_length_160_cov_7.801802_g77309_i0 PRJNA340009 77616 160 7.801802 12.4828832 Hartmannellidae 5776 Tubulinea other_Eukaryota 195 2.08e-45   NTclustered gi|11527309|gb|AF293902.1|AF293902 136464 g77309 i0 99.074 61.0875 108 1 99 0 1 108 1453 1346 Saccamoeba limax small subunit ribosomal RNA gene, complete sequence blastn 9774 195 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;