RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA340009" and tax_phylum = "Nitrospinota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospinota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA340009 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19518379 19518379 PRJNA340009_P_NODE_73836_length_162_cov_0.902655_g73529_i0 PRJNA340009 73836 162 0.902655 1.4623011 Nitrospinota bacterium 2026769 Bacteria Bacteria 111 1.3600000000000002e-27   NR MBI3329174.1 2026769 g73529 i0 90.7 1 54 5 100 0 1 162 82 135 MBI3329174.1 LLM class flavin-dependent oxidoreductase [Nitrospinota bacterium] diamond 162 111 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
27200973 27200973 PRJNA340009_P_NODE_76862_length_161_cov_0.910714_g76555_i0 PRJNA340009 76862 161 0.910714 1.46624954 Candidatus Nitromaritima sp. SCGC AAA799-A 3101100 Bacteria Bacteria 89 2.68e-19   NR KMP12721.1 1628278 g76555 i0 73.6 1.95652173913043 53 14 98.8 0 2 160 55 107 KMP12721.1 hypothetical protein UR09_00045 [Candidatus Nitromaritima sp. SCGC AAA799-A02] diamond 315 89 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Candidatus Nitromaritima Candidatus Nitromaritima sp. SCGC AAA799-A02
28938002 28938002 PRJNA340009_P_NODE_50348_length_183_cov_1.492537_g50041_i0 PRJNA340009 50348 183 1.492537 2.73134271 Nitrospinota bacterium 2026769 Bacteria Bacteria 41.6 0.0425   NR MEK6546535.1 2026769 g50041 i0 75 0.39344262295082 24 6 39.3 0 83 12 275 298 MEK6546535.1 right-handed parallel beta-helix repeat-containing protein [Nitrospinota bacterium] diamond 72 41.6 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
30011701 30011701 PRJNA340009_P_NODE_8431_length_388_cov_2.864307_g8124_i0 PRJNA340009 8431 388 2.864307 11.11351116 Nitrospinota bacterium 2026769 Bacteria Bacteria 89 1.31e-18   NR MBI5750127.1 2026769 g8124 i0 45.1 2.70618556701031 82 44 62.6 1 146 388 21 102 MBI5750127.1 DUF2851 family protein [Nitrospinota bacterium] diamond 1050 89 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;