RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA340009" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA340009 · 8 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27169316 27169316 PRJNA340009_P_NODE_69422_length_164_cov_0.886957_g69115_i0 PRJNA340009 69422 164 0.886957 1.45460948 Fibrobacterota bacterium 2052160 Bacteria Bacteria 94.4 1.63e-22   NR MBK9577754.1 2052160 g69115 i0 84.3 0.932926829268293 51 8 93.3 0 1 153 56 106 MBK9577754.1 elongation factor P [Fibrobacterota bacterium] diamond 153 94.4 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
27502899 27502899 PRJNA340009_P_NODE_61963_length_167_cov_0.864407_g61656_i0 PRJNA340009 61963 167 0.864407 1.44355969 Bacteria 2 Bacteria Bacteria 95.9 2.5300000000000003e-21   NR QQS07523.1 2052160 g61656 i0 83 2.8562874251497 53 9 95.2 0 160 2 1 53 QQS07523.1 MAG: isoleucine--tRNA ligase [Fibrobacterota bacterium] diamond 477 95.9 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
28874718 28874718 PRJNA340009_P_NODE_65288_length_166_cov_0.871795_g64981_i0 PRJNA340009 65288 166 0.871795 1.4471797 Fibrobacterota bacterium 2052160 Bacteria Bacteria 83.6 3.96e-17   NR MEN9354133.1 2052160 g64981 i0 77.4 0.957831325301205 53 12 95.8 0 7 165 82 134 MEN9354133.1 hypothetical protein [Fibrobacterota bacterium] diamond 159 83.6 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
29159129 29159129 PRJNA340009_P_NODE_76389_length_161_cov_0.910714_g76082_i0 PRJNA340009 76389 161 0.910714 1.46624954 Fibrobacterota bacterium 2052160 Bacteria Bacteria 58.9 2.35e-8   NR MBW8890480.1 2052160 g76082 i0 60.4 0.987577639751553 53 16 98.8 1 161 3 170 217 MBW8890480.1 sigma-70 family RNA polymerase sigma factor [Fibrobacterota bacterium] diamond 159 58.9 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
29695333 29695333 PRJNA340009_P_NODE_62310_length_167_cov_0.864407_g62003_i0 PRJNA340009 62310 167 0.864407 1.44355969 Fibrobacter sp. 35828 Bacteria Bacteria 102 1.06e-24   NR WP_407457182.1 35828 g62003 i0 85.5 0.988023952095808 55 8 98.8 0 1 165 80 134 WP_407457182.1 HNH endonuclease signature motif containing protein [Fibrobacter sp.] diamond 165 102 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
30043040 30043040 PRJNA340009_P_NODE_32891_length_218_cov_7.266272_g32584_i0 PRJNA340009 32891 218 7.266272 15.84047296 Chitinispirillaceae bacterium 2813024 Bacteria Bacteria 43.1 0.0133   NR HEX2959828.1 2813024 g32584 i0 48.1 0.743119266055046 54 26 74.3 2 168 7 102 153 HEX2959828.1 HlyD family efflux transporter periplasmic adaptor subunit [Chitinispirillaceae bacterium] diamond 162 43.1 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinispirillia Chitinispirillales Chitinispirillaceae   Chitinispirillaceae bacterium
30706533 30706533 PRJNA340009_P_NODE_52294_length_180_cov_1.519084_g51987_i0 PRJNA340009 52294 180 1.519084 2.7343512 Fibrobacter sp. 35828 Bacteria Bacteria 75.1 5.56e-16   NR MDR1759855.1 35828 g51987 i0 58.5 0.883333333333333 53 22 88.3 0 180 22 32 84 MDR1759855.1 DUF3781 domain-containing protein [Fibrobacter sp.] diamond 159 75.1 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
31908030 31908030 PRJNA340009_P_NODE_74497_length_162_cov_0.902655_g74190_i0 PRJNA340009 74497 162 0.902655 1.4623011 Fibrobacterota bacterium 2052160 Bacteria Bacteria 106 2.03e-26   NR MEN9355515.1 2052160 g74190 i0 96 0.925925925925926 50 2 92.6 0 150 1 49 98 MEN9355515.1 hypothetical protein [Fibrobacterota bacterium] diamond 150 106 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;