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contig_metadata

11 rows where bioproject = "PRJNA340009" and tax_phylum = "Chlorobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA340009 · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2942497 2942497 PRJNA340009_P_NODE_14703_length_308_cov_6.633205_g14396_i0 PRJNA340009 14703 308 6.633205 20.4302714 Chlorobiota bacterium 2268192 Bacteria Bacteria 549 8.359999999999996e-152   NTclustered gi|1958119998|gb|CP065014.1| 2268192 g14396 i0 99.34 0.983766233766234 303 2 98 0 1 303 1946528 1946830 MAG: Chlorobiota bacterium isolate Ribe_18-Q3-R11-54_MAXAC.096_cln chromosome, complete genome blastn 303 549 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
4219377 4219377 PRJNA340009_P_NODE_35224_length_212_cov_2.429448_g34917_i0 PRJNA340009 35224 212 2.429448 5.15042976 Chloroherpeton thalassium 100716 Bacteria Bacteria 54.7 0.005   NTclustered gi|193087197|gb|CP001100.1| 517418 g34917 i0 87.5 0.358490566037736 48 4 23 2 59 106 1577615 1577570 Chloroherpeton thalassium ATCC 35110, complete genome blastn 76 54.7 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chloroherpetonaceae Chloroherpeton Chloroherpeton thalassium
6769669 6769669 PRJNA340009_P_NODE_29866_length_227_cov_7.775281_g29559_i0 PRJNA340009 29866 227 7.775281 17.64988787 Chlorobiota bacterium 2268192 Bacteria Bacteria 403 4.85e-108   NTclustered gi|1958119998|gb|CP065014.1| 2268192 g29559 i0 99.55 0.977973568281938 222 0 97 1 1 221 3056388 3056609 MAG: Chlorobiota bacterium isolate Ribe_18-Q3-R11-54_MAXAC.096_cln chromosome, complete genome blastn 222 403 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
27990843 27990843 PRJNA340009_P_NODE_66985_length_165_cov_0.879310_g66678_i0 PRJNA340009 66985 165 0.87931 1.4508615 Chlorobium sp. 1095 Bacteria Bacteria 60.1 1.01e-8   NR MBV5330610.1 1095 g66678 i0 60.8 3.76363636363636 51 20 92.7 0 1 153 127 177 MBV5330610.1 hypothetical protein [Chlorobium sp.] diamond 621 60.1 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.
28906137 28906137 PRJNA340009_P_NODE_69328_length_164_cov_0.886957_g69021_i0 PRJNA340009 69328 164 0.886957 1.45460948 Chlorobiales bacterium 2723030 Bacteria Bacteria 57.8 5.76e-8   NR MBC8044077.1 2723030 g69021 i0 51.9 0.98780487804878 54 26 98.8 0 163 2 19 72 MBC8044077.1 tetratricopeptide repeat protein [Chlorobiales bacterium] diamond 162 57.8 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales     Chlorobiales bacterium
29663759 29663759 PRJNA340009_P_NODE_64050_length_166_cov_1.264957_g63743_i0 PRJNA340009 64050 166 1.264957 2.09982862 Chloroherpetonaceae bacterium 2969135 Bacteria Bacteria 56.2 7.06e-8   NR MEN6512265.1 2969135 g63743 i0 66.7 0.650602409638554 36 12 65.1 0 48 155 47 82 MEN6512265.1 hypothetical protein [Chloroherpetonaceae bacterium] diamond 108 56.2 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chloroherpetonaceae   Chloroherpetonaceae bacterium
30200878 30200878 PRJNA340009_P_NODE_72492_length_163_cov_0.894737_g72185_i0 PRJNA340009 72492 163 0.894737 1.45842131 Chlorobiota bacterium 2268192 Bacteria Bacteria 46.6 5.39e-4   NR MFN3196289.1 2268192 g72185 i0 44.7 0.865030674846626 47 26 86.5 0 21 161 242 288 MFN3196289.1 hypothetical protein [Chlorobiota bacterium] diamond 141 46.6 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
30376708 30376708 PRJNA340009_P_NODE_28392_length_232_cov_3.874317_g28085_i0 PRJNA340009 28392 232 3.874317 8.98841544 Bacteria 2 Bacteria Bacteria 140 3.05e-38   NR MEI8103065.1 1095 g28085 i0 90.8 1.96551724137931 76 7 98.3 0 4 231 108 183 MEI8103065.1 IS3 family transposase [Chlorobium sp.] diamond 456 140 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.
32305258 32305258 PRJNA340009_P_NODE_54759_length_176_cov_2.188976_g54452_i0 PRJNA340009 54759 176 2.188976 3.85259776 Pseudomonadati 3379134 Bacteria Bacteria 65.1 3.53e-11   NR MEI8103116.1 1095 g54452 i0 56.9 1.97727272727273 58 25 98.9 0 175 2 27 84 MEI8103116.1 helix-turn-helix domain-containing protein [Chlorobium sp.] diamond 348 65.5 0.993893129770992 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.
32446113 32446113 PRJNA340009_P_NODE_1519_length_776_cov_3.337001_g1257_i0 PRJNA340009 1519 776 3.337001 25.89512776 Chlorobium sp. 1095 Bacteria Bacteria 402 1.32e-137   NR MEI8103065.1 1095 g1257 i0 87.7 2.48582474226804 219 27 84.7 0 775 119 176 394 MEI8103065.1 IS3 family transposase [Chlorobium sp.] diamond 1929 402 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.
32778376 32778376 PRJNA340009_P_NODE_44900_length_191_cov_4.295775_g44593_i0 PRJNA340009 44900 191 4.295775 8.20493025 Pseudomonadati 3379134 Bacteria Bacteria 80.5 9.25e-16   NR KER10942.1 1519464 g44593 i0 63.3 12.0785340314136 60 22 94.2 0 7 186 534 593 KER10942.1 MAG: aspartate kinase [[Candidatus Thermochlorobacteriaceae] bacterium GBChlB] diamond 2307 81.3 0.990159901599016 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chloroherpetonaceae   [Candidatus Thermochlorobacteriaceae] bacterium GBChlB

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;