RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA340009" and tax_phylum = "Candidatus Spechtiibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Spechtiibacteriota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA340009 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28622325 28622325 PRJNA340009_P_NODE_66707_length_165_cov_0.879310_g66400_i0 PRJNA340009 66707 165 0.87931 1.4508615 Candidatus Spechtbacteria bacterium RIFCSPHIGHO2_ 2750079 Bacteria Bacteria 89 3.15e-19   NR OGZ58447.1 1802158 g66400 i0 84.9 0.963636363636364 53 8 96.4 0 160 2 100 152 OGZ58447.1 MAG: redox-regulated ATPase YchF [Candidatus Spechtbacteria bacterium RIFCSPHIGHO2_01_FULL_43_30] diamond 159 89 1 Bacteria Bacteria candidate phyla   Candidatus Spechtiibacteriota         Candidatus Spechtbacteria bacterium RIFCSPHIGHO2_01_FULL_43_30
31180205 31180205 PRJNA340009_P_NODE_29435_length_229_cov_1.133333_g29128_i0 PRJNA340009 29435 229 1.133333 2.59533257 Candidatus Spechtbacteria bacterium RIFCSPHIGHO2_ 2750079 Bacteria Bacteria 106 1.32e-25   NR OGZ59181.1 1802159 g29128 i0 78.3 0.903930131004367 69 15 90.4 0 211 5 1 69 OGZ59181.1 MAG: hypothetical protein A3B96_00280 [Candidatus Spechtbacteria bacterium RIFCSPHIGHO2_02_FULL_43_15b] diamond 207 106 1 Bacteria Bacteria candidate phyla   Candidatus Spechtiibacteriota         Candidatus Spechtbacteria bacterium RIFCSPHIGHO2_02_FULL_43_15b

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;