RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA340009" and tax_phylum = "Candidatus Shapironibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Shapironibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA340009 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27327685 27327685 PRJNA340009_P_NODE_6663_length_426_cov_5.816976_g6356_i0 PRJNA340009 6663 426 5.816976 24.78031776 Candidatus Shapirobacteria bacterium 2053613 Bacteria Bacteria 158 6.21e-45   NR MFA6185107.1 2053613 g6356 i0 66.7 2.43661971830986 114 38 80.3 0 54 395 179 292 MFA6185107.1 acetaldehyde dehydrogenase (acetylating) [Candidatus Shapirobacteria bacterium] diamond 1038 158 1 Bacteria Bacteria candidate phyla   Candidatus Shapironibacteriota         Candidatus Shapirobacteria bacterium
30597337 30597337 PRJNA340009_P_NODE_77753_length_160_cov_3.216216_g77446_i0 PRJNA340009 77753 160 3.216216 5.1459456 Bacteria 2 Bacteria Bacteria 55.8 2.07e-7   NR MBM3205465.1 2053613 g77446 i0 87.1 2.325 31 4 58.1 0 160 68 217 247 MBM3205465.1 50S ribosomal protein L2 [Candidatus Shapirobacteria bacterium] diamond 372 55.8 1 Bacteria Bacteria candidate phyla   Candidatus Shapironibacteriota         Candidatus Shapirobacteria bacterium
31211696 31211696 PRJNA340009_P_NODE_38635_length_204_cov_2.438710_g38328_i0 PRJNA340009 38635 204 2.43871 4.9749684 Candidatus Shapirobacteria bacterium 2053613 Bacteria Bacteria 122 1.8599999999999997e-30   NR MBI2464923.1 2053613 g38328 i0 85.1 0.985294117647059 67 10 98.5 0 203 3 197 263 MBI2464923.1 aspartate--tRNA ligase [Candidatus Shapirobacteria bacterium] diamond 201 122 1 Bacteria Bacteria candidate phyla   Candidatus Shapironibacteriota         Candidatus Shapirobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;