RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA340009" and tax_phylum = "Candidatus Niyogiibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Niyogiibacteriota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA340009 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28179888 28179888 PRJNA340009_P_NODE_36546_length_209_cov_1.275000_g36239_i0 PRJNA340009 36546 209 1.275 2.66475 Candidatus Niyogibacteria bacterium RIFCSPLOWO2_ 2750078 Bacteria Bacteria 78.2 7.01e-15   NR OGZ29909.1 1801724 g36239 i0 89.5 0.545454545454545 38 4 54.5 0 53 166 177 214 OGZ29909.1 MAG: hypothetical protein A2931_00885 [Candidatus Niyogibacteria bacterium RIFCSPLOWO2_01_FULL_45_48] diamond 114 78.2 1 Bacteria Bacteria candidate phyla   Candidatus Niyogiibacteriota         Candidatus Niyogibacteria bacterium RIFCSPLOWO2_01_FULL_45_48
31243740 31243740 PRJNA340009_P_NODE_63075_length_167_cov_0.864407_g62768_i0 PRJNA340009 63075 167 0.864407 1.44355969 Candidatus Niyogibacteria bacterium 2750078 Bacteria Bacteria 72.8 3.35e-13   NR MBI1956949.1 2750078 g62768 i0 73.8 2.26347305389222 42 11 75.4 0 1 126 536 577 MBI1956949.1 DNA polymerase/3'-5' exonuclease PolX [Candidatus Niyogibacteria bacterium] diamond 378 72.8 1 Bacteria Bacteria candidate phyla   Candidatus Niyogiibacteriota         Candidatus Niyogibacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;