RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA340009" and tax_phylum = "Candidatus Auribacterota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Auribacterota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA340009 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27643565 27643565 PRJNA340009_P_NODE_19644_length_272_cov_1.699552_g19337_i0 PRJNA340009 19644 272 1.699552 4.62278144 Candidatus Auribacterota bacterium 2093365 Bacteria Bacteria 150 8.119999999999997e-42   NR MCX6339059.1 2093365 g19337 i0 75.6 5.91176470588235 90 22 99.3 0 1 270 287 376 MCX6339059.1 nickel-dependent hydrogenase large subunit [Candidatus Auribacterota bacterium] diamond 1608 150 1 Bacteria PVC group Pseudomonadati Candidatus Auribacterota         Candidatus Auribacterota bacterium
28274746 28274746 PRJNA340009_P_NODE_51766_length_181_cov_1.159091_g51459_i0 PRJNA340009 51766 181 1.159091 2.09795471 Candidatus Theseobacter exili 3039698 Bacteria Bacteria 99.4 3.11e-24   NR MDP8218675.1 3039698 g51459 i0 79.3 0.961325966850829 58 12 96.1 0 174 1 24 81 MDP8218675.1 signal peptidase I [Candidatus Theseobacter exili] diamond 174 99.4 1 Bacteria PVC group Pseudomonadati Candidatus Auribacterota Candidatus Auribacteria Candidatus Theseobacterales Candidatus Theseobacteraceae Candidatus Theseobacter Candidatus Theseobacter exili
29758731 29758731 PRJNA340009_P_NODE_62551_length_167_cov_0.864407_g62244_i0 PRJNA340009 62551 167 0.864407 1.44355969 Candidatus Auribacterota bacterium 2093365 Bacteria Bacteria 76.3 1.9e-14   NR MDX9704063.1 2093365 g62244 i0 65.5 0.988023952095808 55 19 98.8 0 165 1 304 358 MDX9704063.1 DNA (cytosine-5-)-methyltransferase [Candidatus Auribacterota bacterium] diamond 165 76.3 1 Bacteria PVC group Pseudomonadati Candidatus Auribacterota         Candidatus Auribacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;