RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA340009", tax_kingdom = "Thermotogati" and tax_phylum = "Thermotogota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermotogota · 6 ✖

tax_kingdom 1

  • Thermotogati · 6 ✖

bioproject 1

  • PRJNA340009 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3620751 3620751 PRJNA340009_P_NODE_58523_length_171_cov_1.672131_g58216_i0 PRJNA340009 58523 171 1.672131 2.85934401 Mesotoga sp. 2053577 Bacteria Bacteria 96.3 4.11e-22   NR HRV01178.1 2053577 g58216 i0 85.7 0.982456140350877 56 8 98.2 0 2 169 43 98 HRV01178.1 DUF5309 family protein [Mesotoga sp.] diamond 168 96.3 1 Bacteria   Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Mesotoga Mesotoga sp.
4219309 4219309 PRJNA340009_P_NODE_28624_length_231_cov_10.686813_g28317_i0 PRJNA340009 28624 231 10.686813 24.68653803 Bacteria 2 Bacteria Bacteria 128 2.8499999999999995e-35   NR WP_109606442.1 1255275 g28317 i0 80.6 50.1558441558442 72 14 93.5 0 14 229 58 129 WP_109606442.1 MULTISPECIES: ATP-dependent Clp endopeptidase proteolytic subunit ClpP [Oceanotoga] diamond 11586 129 0.992248062015504 Bacteria   Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Oceanotoga  
16969888 16969888 PRJNA340009_P_NODE_70054_length_164_cov_0.886957_g69747_i0 PRJNA340009 70054 164 0.886957 1.45460948 Thermosipho africanus 2421 Bacteria Bacteria 56.5 0.001   NTclustered gi|217035986|gb|CP001185.1| 484019 g69747 i0 97.059 0.207317073170732 34 0 21 1 129 162 679829 679797 Thermosipho africanus TCF52B, complete genome blastn 34 56.5 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Thermosipho Thermosipho africanus
31419109 31419109 PRJNA340009_P_NODE_65856_length_165_cov_2.370690_g65549_i0 PRJNA340009 65856 165 2.37069 3.9116385 Thermotogati 3384194 Bacteria Bacteria 97.1 8.079999999999998e-24   NR MFN3692135.1 1871331 g65549 i0 78.2 3 55 12 100 0 165 1 59 113 MFN3692135.1 TIR domain-containing protein [Fervidobacterium sp.] diamond 495 97.1 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium sp.
31813144 31813144 PRJNA340009_P_NODE_72657_length_162_cov_44.008850_g72350_i0 PRJNA340009 72657 162 44.00885 71.294337 Petrotoga olearia 156203 Bacteria Bacteria 81.6 1.13e-16   NR WP_103066482.1 156203 g72350 i0 82.1 1.68518518518519 39 7 72.2 0 160 44 19 57 WP_103066482.1 galactose-1-phosphate uridylyltransferase [Petrotoga olearia] diamond 273 81.6 1 Bacteria   Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Petrotoga Petrotoga olearia
32002941 32002941 PRJNA340009_P_NODE_13038_length_324_cov_4.236364_g12731_i0 PRJNA340009 13038 324 4.236364 13.72581936 Fervidobacterium sp. 1871331 Bacteria Bacteria 84.7 7.03e-18   NR HQE50591.1 1871331 g12731 i0 90 0.37037037037037 40 4 37 0 121 2 140 179 HQE50591.1 hypothetical protein [Fervidobacterium sp.] diamond 120 84.7 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;