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contig_metadata

18 rows where bioproject = "PRJNA340009", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 18 ✖

tax_kingdom 1

  • Metazoa · 18 ✖

tax_clade 1

bioproject 1

  • PRJNA340009 · 18 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
392083 392083 PRJNA340009_P_NODE_28401_length_232_cov_3.655738_g28094_i0 PRJNA340009 28401 232 3.655738 8.48131216 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.021   NTclustered gi|690018453|emb|LM525691.1| 174720 g28094 i0 100 0.120689655172414 28 0 12 0 7 34 71051 71078 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000088 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
392595 392595 PRJNA340009_P_NODE_74961_length_162_cov_0.902655_g74654_i0 PRJNA340009 74961 162 0.902655 1.4623011 Ficotylus congestae 458166 Nematoda Nematoda 65.8 1.73e-6   NTclustered gi|154819873|gb|EU018047.1| 458166 g74654 i0 97.368 19.1604938271605 38 1 23 0 120 157 586 623 Ficotylus congestae isolate 460 28S ribosomal RNA gene, partial sequence blastn 3104 65.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neotylenchidae Ficotylus Ficotylus congestae
5495940 5495940 PRJNA340009_P_NODE_51425_length_181_cov_2.303030_g51118_i0 PRJNA340009 51425 181 2.30303 4.1684843 Strongyloides ratti 34506 Nematoda Nematoda 52.8 0.015   NTclustered gi|1376157323|ref|XM_024646105.1| 34506 g51118 i0 100 0.154696132596685 28 0 15 0 21 48 285 312 Strongyloides ratti 7TM GPCR, serpentine receptor class v (Srv) family-containing protein (SRAE_0000024200), partial mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
11273333 11273333 PRJNA340009_P_NODE_66149_length_165_cov_1.672414_g65842_i0 PRJNA340009 66149 165 1.672414 2.7594831 Metazoa 33208 Nematoda Nematoda 58.4 2.97e-4   NTclustered gi|2082287883|ref|XM_043081596.1| 6279 g65842 i0 92.683 2.65454545454545 41 2 24 1 24 63 281 321 Brugia malayi Uncharacterized protein (Bm10604), partial mRNA blastn 438 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
18243939 18243939 PRJNA340009_P_NODE_55275_length_175_cov_4.047619_g54968_i0 PRJNA340009 55275 175 4.047619 7.08333325 Trichinella spiralis 6334 Nematoda Nematoda 52.8 0.015   NTclustered gi|120407193|gb|AC196187.1| 6334 g54968 i0 100 0.16 28 0 16 0 87 114 117734 117761 Trichinella spiralis BAC clone TS195-17H12 from chromosome unknown, complete sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
26648568 26648568 PRJNA340009_P_NODE_28821_length_231_cov_1.587912_g28514_i0 PRJNA340009 28821 231 1.587912 3.66807672 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 82 3.99e-16   NR KJH52848.1 29172 g28514 i0 50.7 8.28571428571429 71 33 89.6 1 223 17 338 408 KJH52848.1 u-box domain protein [Dictyocaulus viviparus] diamond 1914 82.8 0.990338164251208 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Dictyocaulus Dictyocaulus viviparus
27106141 27106141 PRJNA340009_P_NODE_22082_length_258_cov_56.033493_g21775_i0 PRJNA340009 22082 258 56.033493 144.56641194 Mesorhabditis spiculigera 96644 Nematoda Nematoda 48.5 3.23e-4   NR CAJ0579586.1 96644 g21775 i0 79.3 0.662790697674419 29 6 33.7 0 181 95 214 242 CAJ0579586.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 171 48.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
27629217 27629217 PRJNA340009_P_NODE_41664_length_198_cov_1.302013_g41357_i0 PRJNA340009 41664 198 1.302013 2.57798574 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 66.6 5.99e-11   NR VDP03494.1 241478 g41357 i0 71.1 6.74242424242424 45 12 68.2 1 22 156 114 157 VDP03494.1 unnamed protein product [Soboliphyme baturini] diamond 1335 66.6 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
28653784 28653784 PRJNA340009_P_NODE_53047_length_179_cov_1.176923_g52740_i0 PRJNA340009 53047 179 1.176923 2.10669217 Aphelenchoides avenae 70226 Nematoda Nematoda 73.9 1.5700000000000001e-13   NR KAH7729468.1 70226 g52740 i0 63.8 0.972067039106145 58 18 97.2 1 3 176 658 712 KAH7729468.1 isoleucyl-tRNA synthetase [Aphelenchoides avenae] diamond 174 73.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
28685489 28685489 PRJNA340009_P_NODE_17947_length_283_cov_1.547009_g17640_i0 PRJNA340009 17947 283 1.547009 4.37803547 Wuchereria bancrofti 6293 Nematoda Nematoda 48.5 9.27e-5   NR VDM17700.1 6293 g17640 i0 32.8 0.614840989399293 58 35 57.2 1 268 107 36 93 VDM17700.1 unnamed protein product [Wuchereria bancrofti] diamond 174 48.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
30296305 30296305 PRJNA340009_P_NODE_29572_length_228_cov_4.586592_g29265_i0 PRJNA340009 29572 228 4.586592 10.45742976 Pristionchus fissidentatus 1538716 Nematoda Nematoda 67.4 5.89e-11   NR GMT24589.1 1538716 g29265 i0 50.9 2.71052631578947 57 28 75 0 226 56 306 362 GMT24589.1 hypothetical protein PFISCL1PPCAC_15886, partial [Pristionchus fissidentatus] diamond 618 67.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
30674937 30674937 PRJNA340009_P_NODE_71073_length_163_cov_0.894737_g70766_i0 PRJNA340009 71073 163 0.894737 1.45842131 Soboliphyme baturini 241478 Nematoda Nematoda 42 0.0231   NR VDP31214.1 241478 g70766 i0 51.4 0.644171779141104 35 17 64.4 0 34 138 186 220 VDP31214.1 unnamed protein product [Soboliphyme baturini] diamond 105 42 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
31275372 31275372 PRJNA340009_P_NODE_69095_length_164_cov_0.886957_g68788_i0 PRJNA340009 69095 164 0.886957 1.45460948 Caenorhabditis elegans 6239 Nematoda Nematoda 41.2 0.0459   NR NP_509658.1 6239 g68788 i0 46.7 0.823170731707317 45 24 82.3 0 135 1 1049 1093 NP_509658.1 Multidrug resistance-associated protein 1 [Caenorhabditis elegans] diamond 135 41.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
31402119 31402119 PRJNA340009_P_NODE_5336_length_466_cov_2.110312_g5029_i0 PRJNA340009 5336 466 2.110312 9.83405392 Steinernema carpocapsae 34508 Nematoda Nematoda 71.6 6.36e-12   NR TKR89800.1 34508 g5029 i0 35.4 1.23605150214592 96 61 61.8 1 38 325 123 217 TKR89800.1 hypothetical protein L596_013847 [Steinernema carpocapsae] diamond 576 71.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae
32382637 32382637 PRJNA340009_P_NODE_56159_length_174_cov_2.448000_g55852_i0 PRJNA340009 56159 174 2.448 4.25952 Wuchereria bancrofti 6293 Nematoda Nematoda 97.8 3.2799999999999995e-23   NR VDM09058.1 6293 g55852 i0 80.7 0.982758620689655 57 11 98.3 0 3 173 147 203 VDM09058.1 unnamed protein product [Wuchereria bancrofti] diamond 171 97.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
32509485 32509485 PRJNA340009_P_NODE_59199_length_170_cov_2.190083_g58892_i0 PRJNA340009 59199 170 2.190083 3.7231411 Gnathostoma spinigerum 75299 Nematoda Nematoda 96.7 8.65e-25   NR MFH4985130.1 75299 g58892 i0 89.1 0.811764705882353 46 5 81.2 0 32 169 1 46 MFH4985130.1 hypothetical protein [Gnathostoma spinigerum] diamond 138 96.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum
32603955 32603955 PRJNA340009_P_NODE_56520_length_174_cov_1.392000_g56213_i0 PRJNA340009 56520 174 1.392 2.42208 Gnathostoma spinigerum 75299 Nematoda Nematoda 71.6 7.44e-15   NR MFH4985130.1 75299 g56213 i0 100 0.517241379310345 30 0 51.7 0 173 84 38 67 MFH4985130.1 hypothetical protein [Gnathostoma spinigerum] diamond 90 71.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum
32872902 32872902 PRJNA340009_P_NODE_26380_length_240_cov_1.848168_g26073_i0 PRJNA340009 26380 240 1.848168 4.4356032 root 1 Root_unresolved Root_unresolved 40.8 0.0364   NR KAK6054055.1 27828 g26073 i0 48.6 0.875 35 18 43.8 0 211 107 35 69 KAK6054055.1 hypothetical protein COOONC_08439 [Cooperia oncophora] diamond 210 41.2 0.990291262135922 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Cooperia Cooperia oncophora

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;