RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJNA340009", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 11 ✖

tax_kingdom 1

  • Metazoa · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA340009 · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4897914 4897914 PRJNA340009_P_NODE_52524_length_179_cov_5.207692_g52217_i0 PRJNA340009 52524 179 5.207692 9.32176868 Metazoa 33208 Echinodermata other_Eukaryota 56.5 0.001   NTclustered gi|2707375869|ref|XM_064108679.1| 7653 g52217 i0 94.444 3.67597765363128 36 2 20 0 24 59 2959 2994 PREDICTED: Lytechinus pictus PDF receptor-like (LOC129275066), transcript variant X1, mRNA blastn 658 56.5 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus
8045892 8045892 PRJNA340009_P_NODE_81227_length_150_cov_24.920792_g80920_i0 PRJNA340009 81227 150 24.920792 37.381188 Anneissia japonica 1529436 Echinodermata other_Eukaryota 80.5 5.6e-11   NTclustered gi|1826672285|ref|XM_033267934.1| 1529436 g80920 i0 92.857 0.773333333333333 56 2 37 2 7 61 1525 1579 PREDICTED: Anneissia japonica actin-2-like (LOC117122384), mRNA blastn 116 80.5 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
9320269 9320269 PRJNA340009_P_NODE_45488_length_190_cov_3.546099_g45181_i0 PRJNA340009 45488 190 3.546099 6.7375881 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 52.8 0.016   NTclustered gi|2037980962|ref|XR_005969370.1| 7654 g45181 i0 100 0.442105263157895 28 0 15 0 163 190 2646 2673 PREDICTED: Lytechinus variegatus 3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase FUT3-like (LOC121410738), transcript variant X3, misc_RNA blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
15694621 15694621 PRJNA340009_P_NODE_23233_length_253_cov_1.705882_g22926_i0 PRJNA340009 23233 253 1.705882 4.31588146 Diadema antillarum 105358 Echinodermata other_Eukaryota 52.8 0.023   NTclustered gi|2919474418|ref|XM_071644746.1| 105358 g22926 i0 100 0.110671936758893 28 0 11 0 84 111 846 819 PREDICTED: Diadema antillarum uncharacterized protein (LOC139733933), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Diadematoida Diadematidae Diadema Diadema antillarum
19517950 19517950 PRJNA340009_P_NODE_35476_length_211_cov_7.469136_g35169_i0 PRJNA340009 35476 211 7.469136 15.75987696 Acanthaster planci 133434 Echinodermata other_Eukaryota 62.1 3.08e-5   NTclustered gi|1229127278|ref|XM_022223935.1| 133434 g35169 i0 91.111 2.55450236966825 45 4 21 0 102 146 401 357 PREDICTED: Acanthaster planci 60S ribosomal protein L34-B-like (LOC110973249), transcript variant X1, mRNA blastn 539 62.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Acanthasteridae Acanthaster Acanthaster planci
19518238 19518238 PRJNA340009_P_NODE_616_length_1163_cov_4.469479_g411_i0 PRJNA340009 616 1163 4.469479 51.98004077 Lytechinus pictus 7653 Echinodermata other_Eukaryota 58.4 0.003   NTclustered gi|2707362118|ref|XM_054910384.2| 7653 g411 i0 97.059 0.0292347377472055 34 1 3 0 584 617 3842 3809 PREDICTED: Lytechinus pictus serine/threonine-protein kinase 32B-like (LOC129273360), mRNA blastn 34 58.4 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus
20793645 20793645 PRJNA340009_P_NODE_44917_length_191_cov_3.894366_g44610_i0 PRJNA340009 44917 191 3.894366 7.43823906 Anneissia japonica 1529436 Echinodermata other_Eukaryota 54.7 0.005   NTclustered gi|1826679452|ref|XM_033271614.1| 1529436 g44610 i0 100 0.151832460732984 29 0 15 0 1 29 250 222 PREDICTED: Anneissia japonica histone PARylation factor 1-like (LOC117125190), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
28085349 28085349 PRJNA340009_P_NODE_71665_length_163_cov_0.894737_g71358_i0 PRJNA340009 71665 163 0.894737 1.45842131 Holothuria leucospilota 206669 Echinodermata other_Eukaryota 42 0.0183   NR KAJ8040522.1 206669 g71358 i0 43.9 2.33742331288344 41 21 75.5 1 132 10 14 52 KAJ8040522.1 hypothetical protein HOLleu_14837 [Holothuria leucospilota] diamond 381 42 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota
29348459 29348459 PRJNA340009_P_NODE_28749_length_231_cov_2.236264_g28442_i0 PRJNA340009 28749 231 2.236264 5.16576984 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 46.2 6.83e-4   NR XP_041472159.1 7654 g28442 i0 38.9 3.66233766233766 72 35 83.1 3 230 39 69 139 XP_041472159.1 ubiquitin-conjugating enzyme E2 variant 2-like [Lytechinus variegatus] diamond 846 46.2 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
29569291 29569291 PRJNA340009_P_NODE_12890_length_326_cov_1.870036_g12583_i0 PRJNA340009 12890 326 1.870036 6.09631736 Apostichopus japonicus 307972 Echinodermata other_Eukaryota 52.8 2.64e-5   NR PIK56948.1 307972 g12583 i0 34.1 2.13496932515337 82 51 72.7 1 81 317 172 253 PIK56948.1 hypothetical protein BSL78_06149 [Apostichopus japonicus] diamond 696 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Stichopodidae Apostichopus Apostichopus japonicus
31844619 31844619 PRJNA340009_P_NODE_34697_length_213_cov_8.536585_g34390_i0 PRJNA340009 34697 213 8.536585 18.18292605 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 43.1 0.0175   NR XP_030840376.1 7668 g34390 i0 58.1 3.09859154929577 31 13 43.7 0 203 111 273 303 XP_030840376.1 mitochondrial glycine transporter B [Strongylocentrotus purpuratus] diamond 660 43.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;