RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA340009", tax_kingdom = "Bacillati" and tax_phylum = "Vulcanimicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA340009 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16969867 16969867 PRJNA340009_P_NODE_68194_length_164_cov_2.173913_g67887_i0 PRJNA340009 68194 164 2.173913 3.56521732 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 67.6 4.89e-7   NTclustered gi|2874253821|emb|OY969805.1| 3107663 g67887 i0 82.667 0.457317073170732 75 13 46 0 90 164 2530773 2530699 MAG: Candidatus Eremiobacteraeota bacterium isolate MFD04463.bin.c.12 genome assembly, chromosome: 1 blastn 75 67.6 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
29379922 29379922 PRJNA340009_P_NODE_46609_length_188_cov_43.323741_g46302_i0 PRJNA340009 46609 188 43.323741 81.44863308 Candidatus Baltobacteraceae bacterium 3107660 Bacteria Bacteria 47 3.03e-4   NR HEV3156281.1 2952909 g46302 i0 48.9 0.718085106382979 45 23 71.8 0 40 174 75 119 HEV3156281.1 GNAT family N-acetyltransferase [Candidatus Baltobacteraceae bacterium] diamond 135 47 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae   Candidatus Baltobacteraceae bacterium
30706549 30706549 PRJNA340009_P_NODE_68294_length_164_cov_1.773913_g67987_i0 PRJNA340009 68294 164 1.773913 2.90921732 Candidatus Baltobacteraceae bacterium 3107660 Bacteria Bacteria 60.1 5.1e-10   NR HTK59574.1 2952909 g67987 i0 57.1 1.79268292682927 49 21 89.6 0 154 8 1 49 HTK59574.1 hypothetical protein [Candidatus Baltobacteraceae bacterium] diamond 294 60.1 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae   Candidatus Baltobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;