RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA340009", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA340009 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29460004 29460004 PRJNA340009_P_NODE_32230_length_220_cov_4.631579_g31923_i0 PRJNA340009 32230 220 4.631579 10.1894738 Pseudomonadati 3379134 Bacteria Bacteria 85.9 1.71e-17   NR NLB59821.1 1932692 g31923 i0 65.3 4.90909090909091 72 25 98.2 0 219 4 176 247 NLB59821.1 DNA mismatch repair protein MutS [Lentisphaerota bacterium] diamond 1080 86.3 0.995365005793743 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
30534225 30534225 PRJNA340009_P_NODE_76453_length_161_cov_0.910714_g76146_i0 PRJNA340009 76453 161 0.910714 1.46624954 Bacteria 2 Bacteria Bacteria 79.7 1.33e-16   NR OGV17847.1 1798570 g76146 i0 80 1.86335403726708 50 10 93.2 0 150 1 146 195 OGV17847.1 MAG: hypothetical protein A2X47_03600 [Lentisphaerae bacterium GWF2_38_69] diamond 300 79.7 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerae bacterium GWF2_38_69

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;