RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA340009", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 4 ✖

tax_clade 1

  • Metamonada · 4 ✖

bioproject 1

  • PRJNA340009 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9320427 9320427 PRJNA340009_P_NODE_60428_length_168_cov_6.176471_g60121_i0 PRJNA340009 60428 168 6.176471 10.37647128 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 58.4 3.03e-4   NTclustered gi|2806449368|ref|XM_068499987.1| 1144522 g60121 i0 92.683 0.244047619047619 41 2 24 1 32 71 2671 2631 Tritrichomonas foetus uncharacterized protein (TRFO_18126), partial mRNA blastn 41 58.4 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30264615 30264615 PRJNA340009_P_NODE_57232_length_173_cov_1.403226_g56925_i0 PRJNA340009 57232 173 1.403226 2.42758098 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 58.2 5.25e-8   NR XP_067773791.1 135588 g56925 i0 55.3 0.815028901734104 47 21 81.5 0 32 172 248 294 XP_067773791.1 von Willebrand factor type A domain containing protein [Histomonas meleagridis] diamond 141 58.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
30345248 30345248 PRJNA340009_P_NODE_62232_length_167_cov_0.864407_g61925_i0 PRJNA340009 62232 167 0.864407 1.44355969 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 68.6 5.94e-12   NR BAM14385.1 56690 g61925 i0 59.6 17.497005988024 52 21 93.4 0 160 5 185 236 BAM14385.1 actin, partial [Tritrichomonas suis] diamond 2922 68.9 0.995645863570392 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas suis
31718235 31718235 PRJNA340009_P_NODE_34857_length_213_cov_2.396341_g34550_i0 PRJNA340009 34857 213 2.396341 5.10420633 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 46.6 0.00108   NR XP_068363021.1 1144522 g34550 i0 32.3 1.7887323943662 65 44 91.5 0 208 14 259 323 XP_068363021.1 Copine family protein [Tritrichomonas foetus] diamond 381 46.6 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;