RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA340009", tax_clade = "Metamonada" and tax_phylum = "Fornicata"

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tax_superkingdom 1

tax_phylum 1

  • Fornicata · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA340009 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31781315 31781315 PRJNA340009_P_NODE_31137_length_223_cov_5.172414_g30830_i0 PRJNA340009 31137 223 5.172414 11.53448322 Hexamita inflata 28002 Fornicata other_Eukaryota 79 1.07e-15   NR CAK8752647.1 28002 g30830 i0 78.6 0.565022421524664 42 9 56.5 0 9 134 190 231 CAK8752647.1 HINF_070915 [Hexamita inflata] diamond 126 79 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata
32603936 32603936 PRJNA340009_P_NODE_39040_length_203_cov_2.649351_g38733_i0 PRJNA340009 39040 203 2.649351 5.37818253 Hexamita inflata 28002 Fornicata other_Eukaryota 56.2 3.86e-7   NR CAK8771693.1 28002 g38733 i0 45.9 2.70443349753695 61 31 88.7 2 187 8 239 298 CAK8771693.1 HINF_054042 [Hexamita inflata] diamond 549 56.2 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata
32872912 32872912 PRJNA340009_P_NODE_64420_length_166_cov_0.871795_g64113_i0 PRJNA340009 64420 166 0.871795 1.4471797 root 1 Root_unresolved Root_unresolved 47 4.11e-4   NR KAG9389553.1 201153 g64113 i0 35.2 5.87349397590361 54 32 97.6 2 164 3 1529 1579 KAG9389553.1 Protein tyrosine kinase [Carpediemonas membranifera] diamond 975 47 1 Eukaryota Metamonada   Fornicata       Carpediemonas Carpediemonas membranifera

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;