RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA340009", tax_clade = "CRuMs" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Eukaryota · 2 ✖

tax_clade 1

  • CRuMs · 2 ✖

bioproject 1

  • PRJNA340009 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24618636 24618636 PRJNA340009_P_NODE_67860_length_164_cov_13.852174_g67553_i0 PRJNA340009 67860 164 13.852174 22.71756536 uncultured Micronuclearia 1595896 Root_unresolved Root_unresolved 291 2.67e-74   NTclustered gi|1516250890|gb|MK177607.1| 1595896 g67553 i0 99.375 97.1951219512195 160 1 98 0 5 164 755 914 Uncultured Micronuclearia clone DDI50.fa small subunit ribosomal RNA gene, partial sequence blastn 15940 291 1 Eukaryota CRuMs       Rigifilida   Micronuclearia uncultured Micronuclearia
24618638 24618638 PRJNA340009_P_NODE_68000_length_164_cov_3.521739_g67693_i0 PRJNA340009 68000 164 3.521739 5.77565196 uncultured Micronuclearia 1595896 Root_unresolved Root_unresolved 255 9.72e-64   NTclustered gi|1516250890|gb|MK177607.1| 1595896 g67693 i0 96.226 31.5609756097561 159 1 94 2 1 154 679 521 Uncultured Micronuclearia clone DDI50.fa small subunit ribosomal RNA gene, partial sequence blastn 5176 255 1 Eukaryota CRuMs       Rigifilida   Micronuclearia uncultured Micronuclearia

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;