RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA340009", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Terryibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Terryibacteriota · 1 ✖

tax_clade 1

  • Bacteria candidate phyla · 1 ✖

bioproject 1

  • PRJNA340009 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27990830 27990830 PRJNA340009_P_NODE_52745_length_179_cov_2.046154_g52438_i0 PRJNA340009 52745 179 2.046154 3.66261566 Candidatus Terrybacteria bacterium RIFCSPHIGHO2_ 2750081 Bacteria Bacteria 78.2 3.49e-15   NR OHA49621.1 1802363 g52438 i0 59.6 0.955307262569832 57 23 95.5 0 2 172 175 231 OHA49621.1 MAG: hypothetical protein A2682_03225 [Candidatus Terrybacteria bacterium RIFCSPHIGHO2_01_FULL_58_15] diamond 171 78.2 1 Bacteria Bacteria candidate phyla   Candidatus Terryibacteriota         Candidatus Terrybacteria bacterium RIFCSPHIGHO2_01_FULL_58_15

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;