RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA340009", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA340009 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15695085 15695085 PRJNA340009_P_NODE_64533_length_166_cov_0.871795_g64226_i0 PRJNA340009 64533 166 0.871795 1.4471797 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 307 2.69e-79   NTclustered gi|399764261|gb|JQ271772.1| 1105345 g64226 i0 100 98.1867469879518 166 0 100 0 1 166 398 563 Vexillifera bacillipedes strain 6HZM 18S ribosomal RNA gene, partial sequence blastn 16299 307 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
18243635 18243635 PRJNA340009_P_NODE_28435_length_232_cov_2.704918_g28128_i0 PRJNA340009 28435 232 2.704918 6.27540976 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 66.6 1.14e-10   NR XP_004356655.1 1257118 g28128 i0 63.2 0.737068965517241 57 21 73.7 0 32 202 327 383 XP_004356655.1 uncharacterized protein ACA1_174150 [Acanthamoeba castellanii str. Neff] diamond 171 66.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19517670 19517670 PRJNA340009_P_NODE_12276_length_333_cov_1.077465_g11969_i0 PRJNA340009 12276 333 1.077465 3.58795845 Vannellidae sp. 2491907 Discosea other_Eukaryota 183 1.0699999999999998e-41   NTclustered gi|1523769315|gb|MH535957.1| 2491907 g11969 i0 77.681 49.3183183183183 345 48 100 22 1 333 338 665 Vannellidae sp. strain 151-1SVA_C2 18S ribosomal RNA gene, partial sequence; mitochondrial blastn 16423 183 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae   Vannellidae sp.
20793917 20793917 PRJNA340009_P_NODE_70937_length_163_cov_1.350877_g70630_i0 PRJNA340009 70937 163 1.350877 2.20192951 Dermamoeba algensis 242549 Discosea other_Eukaryota 285 1.23e-72   NTclustered gi|33946341|gb|AY294148.1| 242549 g70630 i0 98.758 79.1226993865031 161 0 98 2 1 159 943 1103 Dermamoeba algensis small subunit ribosomal RNA gene, partial sequence blastn 12897 285 1 Eukaryota Amoebozoa   Discosea   Longamoebia   Dermamoeba Dermamoeba algensis
23344496 23344496 PRJNA340009_P_NODE_74959_length_162_cov_0.902655_g74652_i0 PRJNA340009 74959 162 0.902655 1.4623011 Vannella septentrionalis 197531 Discosea other_Eukaryota 222 9.709999999999999e-54   NTclustered gi|300078499|gb|GU001161.1| 197531 g74652 i0 92.857 93.6728395061728 154 9 94 2 1 152 1944 2097 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15175 222 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
29474417 29474417 PRJNA340009_P_NODE_76770_length_161_cov_0.910714_g76463_i0 PRJNA340009 76770 161 0.910714 1.46624954 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47 3.9e-4   NR XP_004336759.1 1257118 g76463 i0 48.9 0.875776397515528 47 24 87.6 0 16 156 33 79 XP_004336759.1 peptidase family M3 protein, partial [Acanthamoeba castellanii str. Neff] diamond 141 47 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32666840 32666840 PRJNA340009_P_NODE_5940_length_445_cov_30.825758_g5633_i0 PRJNA340009 5940 445 30.825758 137.1746231 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 85.9 1.13e-18   NR XP_004335921.1 1257118 g5633 i0 56.7 0.451685393258427 67 29 45.2 0 340 140 5 71 XP_004335921.1 uncharacterized protein ACA1_364340 [Acanthamoeba castellanii str. Neff] diamond 201 85.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;