RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA339266" and tax_phylum = "Chloroflexota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA339266 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29726961 29726961 PRJNA339266_P_NODE_8130_length_154_cov_3.094017_g8100_i0 PRJNA339266 8130 154 3.094017 4.76478618 Chloroflexota bacterium 2026724 Bacteria Bacteria 73.2 1.56e-13   NR MBV9322287.1 2026724 g8100 i0 68.2 0.857142857142857 44 14 85.7 0 154 23 306 349 MBV9322287.1 ISKra4 family transposase [Chloroflexota bacterium] diamond 132 73.2 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
30043015 30043015 PRJNA339266_S_NODE_13611_length_166_cov_0.899225_g13600_i0 PRJNA339266 13611 166 0.899225 1.4927135 Anaerolineaceae bacterium 2024896 Bacteria Bacteria 62.8 4.61e-11   NR MBI9043155.1 2024896 g13600 i0 54.9 0.921686746987952 51 23 92.2 0 13 165 6 56 MBI9043155.1 hypothetical protein [Anaerolineaceae bacterium] diamond 153 62.8 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae   Anaerolineaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;