RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA339266" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 10 ✖

tax_kingdom 1

bioproject 1

  • PRJNA339266 · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5495194 5495194 PRJNA339266_S_NODE_3565_length_233_cov_2.015306_g3554_i0 PRJNA339266 3565 233 2.015306 4.69566298 Arcobacter ellisii 913109 Bacteria Bacteria 368 1.82e-97   NTclustered gi|1474793334|gb|CP032097.1| 913109 g3554 i0 95.633 11.9613733905579 229 10 98 0 5 233 2185287 2185059 Arcobacter ellisii strain LMG 26155 chromosome, complete genome blastn 2787 368 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter ellisii
9319586 9319586 PRJNA339266_S_NODE_3648_length_231_cov_8.963918_g3637_i0 PRJNA339266 3648 231 8.963918 20.70665058 Arcobacter ellisii 913109 Bacteria Bacteria 303 5.16e-78   NTclustered gi|1474793334|gb|CP032097.1| 913109 g3637 i0 90.435 10.9350649350649 230 22 99 0 2 231 803655 803884 Arcobacter ellisii strain LMG 26155 chromosome, complete genome blastn 2526 303 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter ellisii
11273042 11273042 PRJNA339266_P_NODE_29_length_749_cov_4.879213_g20_i0 PRJNA339266 29 749 4.879213 36.54530537 root 1 Root_unresolved Root_unresolved 1251 0   NTclustered gi|1226876681|gb|CP022559.1| 197 g20 i0 96.189 102.619492656876 761 16 99 6 1 748 699062 698302 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 76862 1251 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
11273045 11273045 PRJNA339266_P_NODE_5009_length_185_cov_3.729730_g4979_i0 PRJNA339266 5009 185 3.72973 6.9000005 Helicobacter 209 Bacteria Bacteria 148 1.96e-31   NTclustered gi|50957138|gb|AY596223.1| 35818 g4979 i0 100 62.2918918918919 80 0 79 0 105 184 262 183 Helicobacter pullorum strain NCTC 12827 23S ribosomal RNA gene, partial sequence blastn 11524 148 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pullorum
12548380 12548380 PRJNA339266_S_NODE_50_length_696_cov_8.139605_g45_i0 PRJNA339266 50 696 8.139605 56.6516508 root 1 Root_unresolved Root_unresolved 1279 0   NTclustered gi|1226876681|gb|CP022559.1| 197 g45 i0 99.856 101 696 0 99 1 1 695 699023 698328 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 70296 1279 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
29064306 29064306 PRJNA339266_P_NODE_3548_length_198_cov_8.534161_g3518_i0 PRJNA339266 3548 198 8.534161 16.89763878 Helicobacter pylori 210 Bacteria Bacteria 45.4 4.19e-4   NR GAA9044369.1 210 g3518 i0 80 0.378787878787879 25 5 37.9 0 179 105 54 78 GAA9044369.1 hypothetical protein Kyoto184A_02810 [Helicobacter pylori] diamond 75 45.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31387712 31387712 PRJNA339266_P_NODE_6796_length_168_cov_3.015267_g6766_i0 PRJNA339266 6796 168 3.015267 5.06564856 root 1 Root_unresolved Root_unresolved 57.8 1.15e-8   NR GAA8684133.1 210 g6766 i0 86.7 5.35714285714286 30 4 53.6 0 104 15 5 34 GAA8684133.1 hypothetical protein Kyoto145A_0980 [Helicobacter pylori] diamond 900 58.2 0.993127147766323 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31781292 31781292 PRJNA339266_P_NODE_5477_length_183_cov_33.643836_g5447_i0 PRJNA339266 5477 183 33.643836 61.56821988 Helicobacter pylori 210 Bacteria Bacteria 43.9 5.78e-4   NR GAA6799325.1 210 g5447 i0 73.1 0.426229508196721 26 7 42.6 0 39 116 11 36 GAA6799325.1 hypothetical protein Kyoto200A_1690 [Helicobacter pylori] diamond 78 43.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32066092 32066092 PRJNA339266_P_NODE_5478_length_183_cov_30.773973_g5448_i0 PRJNA339266 5478 183 30.773973 56.31637059 Helicobacter pylori 210 Bacteria Bacteria 57.8 1.8e-9   NR GAA9176259.1 210 g5448 i0 62.8 1.40983606557377 43 15 68.9 1 180 55 7 49 GAA9176259.1 hypothetical protein Kyoto193A_0410 [Helicobacter pylori] diamond 258 57.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32887104 32887104 PRJNA339266_P_NODE_7640_length_158_cov_36.719008_g7610_i0 PRJNA339266 7640 158 36.719008 58.01603264 Helicobacter pylori 210 Bacteria Bacteria 60.1 2.6200000000000003e-10   NR GAA9176533.1 210 g7610 i0 57.1 1.82278481012658 49 21 93 0 155 9 7 55 GAA9176533.1 hypothetical protein Kyoto193A_0850 [Helicobacter pylori] diamond 288 60.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;