RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA339266", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA339266 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27485497 27485497 PRJNA339266_P_NODE_7823_length_157_cov_1.275000_g7793_i0 PRJNA339266 7823 157 1.275 2.00175 Bdellovibrionales bacterium RIFOXYA1_FULL_38_2 2053517 Bacteria Bacteria 65.9 3.25e-11   NR OFZ26718.1 1797392 g7793 i0 58 0.955414012738854 50 21 95.5 0 8 157 137 186 OFZ26718.1 MAG: hypothetical protein A2181_08155 [Bdellovibrionales bacterium RIFOXYA1_FULL_38_20] diamond 150 65.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium RIFOXYA1_FULL_38_20
28053689 28053689 PRJNA339266_S_NODE_17385_length_155_cov_3.796610_g17374_i0 PRJNA339266 17385 155 3.79661 5.8847455 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 72 1.47e-13   NR HEY8278601.1 3034175 g17374 i0 72 0.967741935483871 50 14 96.8 0 151 2 149 198 HEY8278601.1 hypothetical protein [Bdellovibrionota bacterium] diamond 150 72 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;