RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJNA339266", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Bacteria · 11 ✖

tax_phylum 1

  • Acidobacteriota · 11 ✖

tax_kingdom 1

bioproject 1

  • PRJNA339266 · 11 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20792752 20792752 PRJNA339266_P_NODE_8017_length_155_cov_2.618644_g7987_i0 PRJNA339266 8017 155 2.618644 4.0588982 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 91.3 8.91e-20   NR MEX2262395.1 2212468 g7987 i0 84.3 3.92903225806452 51 8 98.7 0 153 1 550 600 MEX2262395.1 PSD1 and planctomycete cytochrome C domain-containing protein [Bryobacteraceae bacterium] diamond 609 91.3 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
22067915 22067915 PRJNA339266_S_NODE_16298_length_158_cov_2.454545_g16287_i0 PRJNA339266 16298 158 2.454545 3.8781811 Bacteria 2 Bacteria Bacteria 97.1 7.800000000000001e-22   NR MDQ3800988.1 1978231 g16287 i0 94.2 24.4177215189873 52 3 98.7 0 156 1 72 123 MDQ3800988.1 methylmalonyl-CoA mutase family protein [Acidobacteriota bacterium] diamond 3858 97.1 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
26916460 26916460 PRJNA339266_P_NODE_5902_length_181_cov_2.187500_g5872_i0 PRJNA339266 5902 181 2.1875 3.959375 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 63.9 5.29e-10   NR MBC8167065.1 2212468 g5872 i0 53.7 0.895027624309392 54 25 89.5 0 19 180 294 347 MBC8167065.1 alkaline phosphatase family protein [Bryobacteraceae bacterium] diamond 162 63.9 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
27548583 27548583 PRJNA339266_S_NODE_10824_length_176_cov_1.661871_g10813_i0 PRJNA339266 10824 176 1.661871 2.92489296 Acidobacteriota bacterium 1978231 Bacteria Bacteria 60.1 4.39e-10   NR MDQ3801895.1 1978231 g10813 i0 80 0.596590909090909 35 7 59.7 0 175 71 46 80 MDQ3801895.1 hypothetical protein [Acidobacteriota bacterium] diamond 105 60.1 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27580135 27580135 PRJNA339266_P_NODE_8464_length_152_cov_1.469565_g8434_i0 PRJNA339266 8464 152 1.469565 2.2337388 uncultured Pyrinomonadaceae bacterium 2283094 Bacteria Bacteria 50.1 2.78e-5   NR CAA9415325.1 2283094 g8434 i0 85.7 0.552631578947368 28 4 55.3 0 2 85 530 557 CAA9415325.1 MAG: Carbon starvation protein A [uncultured Pyrinomonadaceae bacterium] diamond 84 50.1 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   uncultured Pyrinomonadaceae bacterium
27895830 27895830 PRJNA339266_P_NODE_5965_length_180_cov_2.307692_g5935_i0 PRJNA339266 5965 180 2.307692 4.1538456 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 50.1 2.61e-6   NR HRH40521.1 2283092 g5935 i0 64.1 0.65 39 13 63.3 1 2 115 11 49 HRH40521.1 hypothetical protein [Pyrinomonadaceae bacterium] diamond 117 50.1 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
28369481 28369481 PRJNA339266_P_NODE_8706_length_150_cov_4.389381_g8676_i0 PRJNA339266 8706 150 4.389381 6.5840715 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 84.3 2.33e-17   NR MCY7376739.1 2283092 g8676 i0 88 1 50 6 100 0 1 150 753 802 MCY7376739.1 FtsX-like permease family protein [Pyrinomonadaceae bacterium] diamond 150 84.3 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
30074499 30074499 PRJNA339266_P_NODE_8172_length_154_cov_1.572650_g8142_i0 PRJNA339266 8172 154 1.57265 2.421881 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 69.7 5.39e-13   NR HSK73198.1 2283092 g8142 i0 62.7 5.96103896103896 51 19 99.4 0 153 1 98 148 HSK73198.1 glycoside hydrolase family 19 protein [Pyrinomonadaceae bacterium] diamond 918 69.7 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
30200817 30200817 PRJNA339266_S_NODE_15232_length_161_cov_1.564516_g15221_i0 PRJNA339266 15232 161 1.564516 2.51887076 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 97.8 4.1e-22   NR HSK72459.1 2283092 g15221 i0 84.9 2.96273291925466 53 8 98.8 0 3 161 446 498 HSK72459.1 amino acid permease [Pyrinomonadaceae bacterium] diamond 477 97.8 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
30628834 30628834 PRJNA339266_P_NODE_3853_length_195_cov_1.702532_g3823_i0 PRJNA339266 3853 195 1.702532 3.3199374 Bacteria 2 Bacteria Bacteria 63.9 1.28e-10   NR MCA1558072.1 1978231 g3823 i0 96.7 9.69230769230769 30 1 46.2 0 92 3 148 177 MCA1558072.1 diadenylate cyclase [Acidobacteriota bacterium] diamond 1890 64.3 0.993779160186625 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30959408 30959408 PRJNA339266_P_NODE_794_length_290_cov_3.245059_g764_i0 PRJNA339266 794 290 3.245059 9.4106711 Acidobacteriota bacterium 1978231 Bacteria Bacteria 79.7 6.57e-15   NR MEJ2086228.1 1978231 g764 i0 61.8 3.26896551724138 55 21 56.9 0 175 11 103 157 MEJ2086228.1 protein kinase [Acidobacteriota bacterium] diamond 948 79.7 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;