RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA339266", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA339266 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23343495 23343495 PRJNA339266_S_NODE_3179_length_240_cov_2.300493_g3168_i0 PRJNA339266 3179 240 2.300493 5.5211832 Candidatus Electrothrix gigas 2202844 Bacteria Bacteria 63.9 9.97e-6   NTclustered gi|2706396671|gb|CP147989.1| 2202844 g3168 i0 93.023 1.80833333333333 43 3 18 0 193 235 2987312 2987270 MAG: Candidatus Electrothrix gigas isolate HY10-6 chromosome, complete genome blastn 434 63.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Candidatus Electrothrix Candidatus Electrothrix gigas
32729914 32729914 PRJNA339266_S_NODE_7420_length_193_cov_9.698718_g7409_i0 PRJNA339266 7420 193 9.698718 18.71852574 Desulfobacteraceae bacterium IS3 1934248 Bacteria Bacteria 42.7 0.0197   NR OQX17533.1 1934248 g7409 i0 47.2 0.559585492227979 36 19 56 0 50 157 586 621 OQX17533.1 MAG: hypothetical protein BWK80_39525 [Desulfobacteraceae bacterium IS3] diamond 108 42.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium IS3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;