RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA339266", tax_kingdom = "Pseudomonadati" and tax_phylum = "Aquificota"

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tax_superkingdom 1

tax_phylum 1

  • Aquificota · 1 ✖

tax_kingdom 1

  • Pseudomonadati · 1 ✖

bioproject 1

  • PRJNA339266 · 1 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18243028 18243028 PRJNA339266_S_NODE_13115_length_167_cov_3.176923_g13104_i0 PRJNA339266 13115 167 3.176923 5.30546141 Pampinifervens diazotrophicum 1632018 Bacteria Bacteria 54.7 0.004   NTclustered gi|2624511536|gb|CP117180.1| 1632018 g13104 i0 100 0.173652694610778 29 0 17 0 124 152 252500 252528 Hydrogenobacter sp. T-2 chromosome, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Aquificota Aquificia Aquificales Aquificaceae Pampinifervens Pampinifervens diazotrophicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;